Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00077 ATGGACCCAACTTCCGACCCTCCGCCTCCGCCCACCGCCGTCCCCTTCACGGCGGAACCACCCAACAACAACCACGTGCCCACGGCTGCTGACGCTAACTCCATTCCCAACCACCCACCTTATGACGAGATGATATACACGGCTATTGGGGCTCTGAAGGAGAAAAATGGGTCGAGCAAACGCGCCATAGGAAAGTACATACAGCAAGTGTACAAGAACCTTCCAACCACTCACTCTGCTCTTCTCACTCACCACCTTAACCGTTTGAGATCAGTTAACCTTCTTGTCATGGTAAAAAAATCATATAAGCTCCCCGGATCTGATAATCTTCCACCATCTCCTCCCTCCCAAGTCCACAAAACCCGTGGCAGGCCCCCCAAGCCCAAGCCCCAGCCCACCGCCGACCCTGTCTGGGCTTCTCTCGGCCTGTCGGATGACCCTAACCCTGCCTCTGCTCCTCAGTCTGGAAAAAGAGGCCCGGGTCGTCCAAGAAAGATTCTAGGTCTGAGCCCGGGCTCCGCAGTCCCGGTCCGAAGAGGCCGCCCACCAGGCTCCACCGGGAAATCGAAGGTTTCCAAGAGGGCCGGGCGTCCACCCAAGCCCAAATCCGTCTCCGGGATCTCCAGTGGGCTCAAACGACGGGGCCGCCCGCCTAAAGCCAAATCCAACCTCTCCGTAATCCCCTTTGCCTCTCCGGTTGCTCCTGGCCAGCCCACCATGCAGCCCATCATTCCAACCGTTTCTGTGCCCAATGGGTCCCCCAGACCTAGAGGACGCCCCAGAAAGATCGTTCCTGCTGGTGTTGCTCCACCGCTCACTCTCACTCTTGCCGCCGACGGTGGTGCAGCCCGTGGCCGTGGACGGCCACGCGGAGTGTTTTCTGTGATGACCTCGGGTAGGCTCCAAAAGCTTGCCGTTGGAAGGGCTAAGAATCCTGCAAGAAGGCCAGTGGGCCGTCCTAAGGGATCAACTGCTGCTGCAATCACTGCACATAAGGCTGCTAATGAAGATCTAAGGAAGAAGCTTGAACACTTTCAAACCAAAGTGAAGGAGTCTCTTGGCATGCTTAAGCCATACTTCAACCATGAAAGCCCAGTGACTGCAATTGCAGCAATTCAAGAGCTGGAAGTGCTGTCAACTTTGGATCTTAAGGCAGCATTGAGGGATGAGACTCAGCAACAGCCAGAGCCACTGCCACTGCCTCAGACACAGGTGTATGAACAGCAATATCCTCCACAGCCACAGGCACAGCCACAGCTTCAGGAGTTTTTTCAAACACATACATCAGCTCAAAGCTAG 1299 0.5581 MDPTSDPPPPPTAVPFTAEPPNNNHVPTAADANSIPNHPPYDEMIYTAIGALKEKNGSSKRAIGKYIQQVYKNLPTTHSALLTHHLNRLRSVNLLVMVKKSYKLPGSDNLPPSPPSQVHKTRGRPPKPKPQPTADPVWASLGLSDDPNPASAPQSGKRGPGRPRKILGLSPGSAVPVRRGRPPGSTGKSKVSKRAGRPPKPKSVSGISSGLKRRGRPPKAKSNLSVIPFASPVAPGQPTMQPIIPTVSVPNGSPRPRGRPRKIVPAGVAPPLTLTLAADGGAARGRGRPRGVFSVMTSGRLQKLAVGRAKNPARRPVGRPKGSTAAAITAHKAANEDLRKKLEHFQTKVKESLGMLKPYFNHESPVTAIAAIQELEVLSTLDLKAALRDETQQQPEPLPLPQTQVYEQQYPPQPQAQPQLQEFFQTHTSAQS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00077 432 MobiDBLite consensus disorder prediction 1 17 - -
Viun3g00077 432 SMART AT_hook_2 192 204 IPR017956 GO:0003677
Viun3g00077 432 SMART AT_hook_2 211 223 IPR017956 GO:0003677
Viun3g00077 432 SMART AT_hook_2 176 188 IPR017956 GO:0003677
Viun3g00077 432 SMART AT_hook_2 314 326 IPR017956 GO:0003677
Viun3g00077 432 SMART AT_hook_2 254 266 IPR017956 GO:0003677
Viun3g00077 432 SMART AT_hook_2 283 295 IPR017956 GO:0003677
Viun3g00077 432 SMART AT_hook_2 119 131 IPR017956 GO:0003677
Viun3g00077 432 SMART AT_hook_2 157 169 IPR017956 GO:0003677
Viun3g00077 432 MobiDBLite consensus disorder prediction 395 418 - -
Viun3g00077 432 CDD H15 36 114 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun3g00077 432 SMART h15plus2 35 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun3g00077 432 SUPERFAMILY "Winged helix" DNA-binding domain 36 112 IPR036390 -
Viun3g00077 432 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 37 106 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun3g00077 432 PRINTS AT-hook-like domain signature 252 262 IPR017956 GO:0003677
Viun3g00077 432 PRINTS AT-hook-like domain signature 209 220 IPR017956 GO:0003677
Viun3g00077 432 PRINTS AT-hook-like domain signature 119 129 IPR017956 GO:0003677
Viun3g00077 432 FunFam Histone H1.2 34 114 - -
Viun3g00077 432 Coils Coil 328 348 - -
Viun3g00077 432 Pfam linker histone H1 and H5 family 38 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun3g00077 432 MobiDBLite consensus disorder prediction 103 267 - -
Viun3g00077 432 Gene3D - 34 117 IPR036388 -
Viun3g00077 432 PANTHER HISTONE H1 7 202 - -
Viun3g00077 432 MobiDBLite consensus disorder prediction 388 418 - -
Viun3g00077 432 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00077 Viun-Chr3 344538 347672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00077 42 107 Single Myb Histone (SMH) Gene Family AT1G49950 40.909 9.46e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00077 - - gmx:547676 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00077 3 344538 347672 Viun3g00077 3 344538 347672 ECH