Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00075 ATGCCTTCTCTAGTAGATCTGCAAGGAAAATCAACCTCAGTTGATGTCACATGGGAAGCAGTCTTGGTCAATAGGGCTGCTGATTCCAACTTGTTGAAACTTGAACAAGAAGCCATGAAGATGGCTGCCAGTTCAGGAAAAGATTTTGAAGTAGTTGTAAATAGCAATTTGGTACACAAGCTTGCAATAATGGTGGCTGACTATATGGGTGGATCAGTTAAAGATCCTGAAAGCATGTCTAGAGCCTGGAGGAGTCTTAGTTACAGTCTAAAAGCCACACTTGGCAGCATGGTTTTGCCTCTTGGTTCACTGACCATTGGATTGGCTCGGCATCGCGCATTGTTATTCAAGGTTTTAGCTGACAGTTTGGGCATTCCGTGTCGATTAGTGAAAGGACTGCAGTACATGGGTTCTGATGATGTAGCTATGAACTTTGTCAAAATTGATGATGGAAGGGAGTACATTGTGGACCTAATGGCAGCTCCTGGAGCACTTATTCCATCTGATGCTACTGCATCACACATTGAATGCGATGGATCTTCCTTTGTGGCCAGTCCTTCATCAAGAGAGCTAGATTCGTCCAATGTAGCATCATTCAGTAGCGGGGTTGGAAGTTCATCTGAAGAAACTTCAGACTGTGGAGGGAAAGAATCTGGTTTGAGTGGGCTTGCTACTGGCAAGGAAGATTTAAAGAAACCATCAAATGAATCCAAAAATACCCCCTATGCAGAGAAGACAAGAGTGAAGGAATCTTCCAGCAGAGCTAATTATCCATACATGCATGGAAGATCTCCTTCTTGGACTGAGGGCATCAGTTCCCCTGCAGCACGTAGAATGAAAGTCAAAGATGTTTCCCAATACATGATTGATGCTGCTAAGGAAAATCCTAACTTGGCTCAAAAACTTCATGACGTTTTACTTGAAAGCGGTGTTGTTGCACCTCCAAACTTATTTTCTGAAATGTATCATGGGCAGTTAGGTACTCCAACTGGGACCAATTTTCCAACTGAACAAAAAGATGAAAATAAACAAGCAAGTTGCCAGCAAGAAATTAAGACTGATGACAGCCTAGTTCCTGCTCGATTTTTGCCTCCTTTGCCTTACCACAAAATTCTTCGCAAAGCAACTCTTGGCAGTGGTGATGGCTTAGGAATTGGTCTTTCCCTTGATACAGGGGAAACTACTGGACAGAACATACCATCTCAGGCAGAAGCAGCTCGGGTAAAGTATGGGAAAAATGTCCCAGTGGCAGCGGCTGCAGCTGCTGCTGCGGCTGTTGTTGCATCTTCTATGGTAGTTGCGGTGACAAAATCAAACACTGACTCAAATCTTGAGATTCCTGTAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTTGTAGCAACCACTGCTGCTGTCAGTAAGTATGAGCAGGACAGTCGAAGCGATGGGGATACAGAGGGTGGTGGTTCTGAGTCAAAGGGTAGTGGTGATGGAGAGCCTAATGCTTTAGGAGAAAACTCAGAAGGTGAGAGAAAATCTGACAGATCAGTAAGTAATGACAGCACAAAATCTGATTCTGCACTGGATGAGGTTGCCGAGTATGACATTCCATGGGATGAAATCAAAATGGGAGAGCGTATTGGACTAGGATCATATGGGGAAGTTTACCGTGGTGAATGGCATGGAACTGAAGTTGCCGTAAAGAAGTTCTTATATCAAGATATCTCTGGTGAATTACTTGAAGAGTTCAAAAGTGAGGTCCAAATAATGAAAAGACTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCAGTAACTCGGCCTCCAAATCTTTCAATTGTTTCTGAATTTCTTCCTAGAGGGAGTTTGTATAGATTAATTCACCGACCAAACAATCAATTAGATGAGCGAAGGCGGTTGCGGATGGCCCTTGATGCTGCCCGAGGAATGAACTACCTGCACAGCAGTACTCCAGTGATAGTGCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAACTGGGTTGTGAAGGTATGTGATTTTGGCTTATCACGAATGAAGCATAGCACCTTCCTTTCTTCCAGATCAACTGCGGGAACAGCTGAATGGATGGCTCCAGAAGTGTTGAGAAATGAACTTTCAGATGAAAAGTGCGACGTTTTCAGCTATGGCGTCATATTGTGGGAGCTCTCTACTTTGCAGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCAGTGGGTTTCCAACATCGCCGTCTAGACATTCCAGATGATGTAGACCCTGCCATTGCTGATATTATCAGACAATGCTGGCAGACAGATCCAAAGTTGAGGCCCACATTTGCTGAAATCATGGCTGCTCTGAAGCCATTGCAGAGGCCAATTACTGCTTCTCAAGTGCCTAGATCAAGTGCTCAGTCATCTAGAGTTGCTGAGTTTCCCGCAGGATAG 2448 0.4453 MPSLVDLQGKSTSVDVTWEAVLVNRAADSNLLKLEQEAMKMAASSGKDFEVVVNSNLVHKLAIMVADYMGGSVKDPESMSRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYMGSDDVAMNFVKIDDGREYIVDLMAAPGALIPSDATASHIECDGSSFVASPSSRELDSSNVASFSSGVGSSSEETSDCGGKESGLSGLATGKEDLKKPSNESKNTPYAEKTRVKESSSRANYPYMHGRSPSWTEGISSPAARRMKVKDVSQYMIDAAKENPNLAQKLHDVLLESGVVAPPNLFSEMYHGQLGTPTGTNFPTEQKDENKQASCQQEIKTDDSLVPARFLPPLPYHKILRKATLGSGDGLGIGLSLDTGETTGQNIPSQAEAARVKYGKNVPVAAAAAAAAAVVASSMVVAVTKSNTDSNLEIPVAAAATATAAAVVATTAAVSKYEQDSRSDGDTEGGGSESKGSGDGEPNALGENSEGERKSDRSVSNDSTKSDSALDEVAEYDIPWDEIKMGERIGLGSYGEVYRGEWHGTEVAVKKFLYQDISGELLEEFKSEVQIMKRLRHPNVVLFMGAVTRPPNLSIVSEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHSSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVFSYGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPAIADIIRQCWQTDPKLRPTFAEIMAALKPLQRPITASQVPRSSAQSSRVAEFPAG 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00075 815 SMART serkin_6 535 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00075 815 Gene3D Transferase(Phosphotransferase) domain 1 614 798 - -
Viun3g00075 815 PRINTS Tyrosine kinase catalytic domain signature 758 780 IPR001245 GO:0004672|GO:0006468
Viun3g00075 815 PRINTS Tyrosine kinase catalytic domain signature 648 666 IPR001245 GO:0004672|GO:0006468
Viun3g00075 815 PRINTS Tyrosine kinase catalytic domain signature 695 705 IPR001245 GO:0004672|GO:0006468
Viun3g00075 815 PRINTS Tyrosine kinase catalytic domain signature 714 736 IPR001245 GO:0004672|GO:0006468
Viun3g00075 815 PRINTS Tyrosine kinase catalytic domain signature 609 622 IPR001245 GO:0004672|GO:0006468
Viun3g00075 815 MobiDBLite consensus disorder prediction 796 815 - -
Viun3g00075 815 CDD STKc_MAP3K-like 541 787 - -
Viun3g00075 815 Pfam Protein tyrosine and serine/threonine kinase 535 787 IPR001245 GO:0004672|GO:0006468
Viun3g00075 815 Gene3D Phosphorylase Kinase; domain 1 528 612 - -
Viun3g00075 815 MobiDBLite consensus disorder prediction 194 261 - -
Viun3g00075 815 FunFam Serine/threonine-protein kinase CTR1 614 797 - -
Viun3g00075 815 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 243 796 - -
Viun3g00075 815 Pfam Ethylene-responsive protein kinase Le-CTR1 1 166 - -
Viun3g00075 815 MobiDBLite consensus disorder prediction 498 513 - -
Viun3g00075 815 FunFam Serine/threonine-protein kinase isoform 1 526 613 - -
Viun3g00075 815 MobiDBLite consensus disorder prediction 194 214 - -
Viun3g00075 815 ProSitePatterns Protein kinases ATP-binding region signature. 541 563 IPR017441 GO:0005524
Viun3g00075 815 MobiDBLite consensus disorder prediction 467 522 - -
Viun3g00075 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Viun3g00075 815 ProSiteProfiles Protein kinase domain profile. 535 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00075 815 SUPERFAMILY Protein kinase-like (PK-like) 521 786 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00075 Viun-Chr3 325682 333550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00075 1 807 MAP Kinase Kinase Kinase AT1G73660 65.286 0.0 958
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Viun3g00075 PK_Tyr_Ser-Thr 3.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00075 - - gmx:100778331 1318.52