Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00065 ATGTGGATGGTTGGTTACAACGACGCTGCTGACTTCACCATGCCTGATTATGCACTCAATGGAAGAAAACTCAGGCCTCTCATGCCACGCCCCGTCACTTCTCCCAACAACACCCCAAACGCCAACAACAACAACCCTCCATGCTTCACCCGCATTCATCATGCCAACGATTTCTTCTCACAATATCACAATCTCGCATCAGTGGCAGATCAGGGTAAGAGAGAGTTCAACCCTCCACCGGTAGTGGTGAGTTCGAGGTGGAATCCGACCCCGGAGCAGCTAAGGGCATTGGAGGAATTGTACAGAAGAGGGACGAGAACACCGTCTGCGGAGCAAATCCAACAAATCACGGCGCAGCTTCGGAGGTTTGGAAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCATAAGGCGAGGGAAAGACAGAAACGCCGCCGTCAAATGGAGTCGGCGGCTGAGGGTCATCACGCCCGTGACTATGATGGTACTCTTGAAAAGAAAGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACGCTTGCAAAGGAATCTGTTTCAATACAAAGAGCAGCAAAAGCAGCGGTTGCAGCAGATTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAGTTACAGCACACAAGAAACTTAATGGAGAGGAATGCCACGTGGCACATGATGCAGTTACCTTGTCCTTCCCCTCCCACAGTTTCACCCCACTTCATAAACGCTCCTCCTACCATCTCTACTGCTACCATGGCCACCACACCCTCAGTAACACCAAGAGTAATGGACCCAAAGCTCATTAAGACTCATGATCTCAGCTTCTTTCTCTCACCTAACACAGAAAACGGTGTTATCCACTTAAGCAGTATCAACACCTACACCCCAGATGATATTTCTGTGGAGTCTCAAACCCTTCAACTTTTCCCCGTCAGGAATGAGGATGATGAAGGCAGTGATAACATTAACCACCAAAAAGAGACAGAGGTATCGATCTCAGCAATGAATGCCCCAAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA 1101 0.4796 MWMVGYNDAADFTMPDYALNGRKLRPLMPRPVTSPNNTPNANNNNPPCFTRIHHANDFFSQYHNLASVADQGKREFNPPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHHARDYDGTLEKKDLGASRTVFEVEQTKNWAPSTNCSTLAKESVSIQRAAKAAVAADCRTDGWLQFDEGELQHTRNLMERNATWHMMQLPCPSPPTVSPHFINAPPTISTATMATTPSVTPRVMDPKLIKTHDLSFFLSPNTENGVIHLSSINTYTPDDISVESQTLQLFPVRNEDDEGSDNINHQKETEVSISAMNAPSQFFEFLPLKN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00065 366 ProSiteProfiles 'Homeobox' domain profile. 90 145 IPR001356 GO:0003677
Viun3g00065 366 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 71 360 IPR044555 GO:0003700|GO:0099402
Viun3g00065 366 SMART HOX_1 82 149 IPR001356 GO:0003677
Viun3g00065 366 FunFam WUSCHEL-related homeobox 4 84 151 - -
Viun3g00065 366 Gene3D - 83 144 - -
Viun3g00065 366 MobiDBLite consensus disorder prediction 146 162 - -
Viun3g00065 366 MobiDBLite consensus disorder prediction 143 162 - -
Viun3g00065 366 SUPERFAMILY Homeodomain-like 85 151 IPR009057 -
Viun3g00065 366 CDD homeodomain 86 146 IPR001356 GO:0003677
Viun3g00065 366 Pfam Homeodomain 85 144 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00065 Viun-Chr3 272114 275295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00065 1 366 Wox Gene Family AT3G18010 38.000 1.24e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Viun3g00065 Homeodomain 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00065 - - gmx:100777274 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00065 3 272114 275295 Viun3g00065 3 272114 275295 ECH