Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00054 ATGGATGAATTACTCGGCCTTCTAAGAATTCACATCAAGCGTGGCGTCAACCTCGCCATTCGCGATGTCAGCACCAGCGATCCATACGTCGTCGTTAAGATGGACAAACAGAGGCTGAAGACTCGTGTGATTAAAAAGGACATCAACCCCGAATGGAACGAAGATCTTACCCTTTCCGTGTCAGATCCCTCGATTCCGCTGATGCTGACTGTGTATGATCATGACACTTTCACCATGGATGACAAAATGGGAGATGCAGAACTTGATATCTCACCGTATATAGAAGCCTTGAAGACGCAAGTGGATGATCTTGCCGCTGGAACTATAATCACCAGAATACAACCATGTAGAACGAACTGCCTCGCGGAGGAAAGTTGCGTGGTTTTTGAGAACGGAAAAGTGGTGCAAGATGTTGTTCTAAGACTAAGACACGTGGAATGCGGTGAGCTGGAACTTCAATTGGAATGGATTAGTCTTCCCGGGGCCAAGGGTTTATGA 498 0.4679 MDELLGLLRIHIKRGVNLAIRDVSTSDPYVVVKMDKQRLKTRVIKKDINPEWNEDLTLSVSDPSIPLMLTVYDHDTFTMDDKMGDAELDISPYIEALKTQVDDLAAGTIITRIQPCRTNCLAEESCVVFENGKVVQDVVLRLRHVECGELELQLEWISLPGAKGL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00054 165 SMART C2_3c 7 102 IPR000008 -
Viun3g00054 165 PRINTS C2 domain signature 22 34 IPR000008 -
Viun3g00054 165 PRINTS C2 domain signature 67 75 IPR000008 -
Viun3g00054 165 PRINTS C2 domain signature 46 59 IPR000008 -
Viun3g00054 165 Pfam C2 domain 6 92 IPR000008 -
Viun3g00054 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 142 IPR035892 -
Viun3g00054 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Viun3g00054 165 Gene3D C2 domain 3 163 IPR035892 -
Viun3g00054 165 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00054 Viun-Chr3 244907 246473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00054 38 165 C2H2 Transcription Factor Family AT1G70790 56.154 7.22e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00054 - - pvu:PHAVU_002G330200g 291.967