Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00038 ATGGCGAGGCCAATGGCGAGGCCAGAAAGGACGAGAAGAAATAAAAGCCTAGAGACACTAATGGACTCGGACAAACCAGGAATCGGAAGAAATGTGAACCAACTGGGACCCCAGAAGTTCACTCCTGGCTATGGCCTTGAATTCAGTAACATCTCGTATAGTGTCATAAAAAAGCAGAAAAAGGATGGAGTATGGATCAACAAAGAAACATATCTTCTCCATGACATCTCTGGCCAAGCAGTAAAAGGTGAAATTATGGCAGTCATGGGGCCTAGTGGTGCTGGAAAATCCACCTTTCTTGATGCATTGGCAGGGAGAATTGCTAGAGGGAGTCTAGAAGGATCAGTTAGAATTGATGGAAAACCAATTACTACAAGCTACATGAAAATGGTGTCATCATATGTGATGCAAGATGACCAGCTCTTCCCTATGTTGACGGTTTTTGAAACATTTATGTTTGCAGCTGAGGTTAGGCTTCCTCCTTCCATTTCCAGGGCAGAAAAGAAGAAGAGGGTGTATGAACTCCTTGACCAACTGGGCTTACAGAGTGCTACACATACATATATTGGTGACGAAGGAAGGAGAGGAGTGTCAGGAGGGGAACGACGAAGGGTATCTATTGGCATAGACATCATCCATAAGCCATCACTTCTGTTTCTTGACGAACCTACCTCAGGCCTTGACTCTACAAGTGCTTACAGTGTTGTAGAAAAGGTTAAAGACATAGCTCGAGGAGGAAGCGTTGTCCTTATGACCATACACCAGCCTTCATTTAGAATTCAAATGCTCCTGGATCAGATCACCGTCCTTGCAAGGGGAAGATTGATATACATGGGCAAGCCAGATGCACTACAAGCTCACATGTCCAGATTTGGAAGGCCTGTGCCTGATGGAGAAAACAGTATTGAGTATCTTCTAGATGTTATTAGTGAATATGATCAAGCAACGGTTGGGCTTGACCCCCTAATCCAATTCCAACGAGATGGCCTCAAACCTGACCCCGCAGCCATGACCCCTGTTCCAAAAACTCCAAGGACATCTTTCAGAAGGAACACCCCTGCATCTAAGCACTTGATTAGCCTACGCAGCCAAGGATTTACTGCTGGAACACAACAACCTCATTCTGCACAGTTTAGTTATCGCGACGAGGATGACGATGATGACAATTTCGATAACTCCCTAGAAAGGAACAGTGTCCCAACACCAAGGAATATGACCAGTGGTGTTCACCCACGTTTGGCTTCTCAGTTCTACAAAGATTTCTCGGCCAAAGATTTCTCTATCTGGCTTTACCATGGTGTGGTAGGAACGCCGCGGCGGCAACCATCATGGACTCCGGCAAGAACACCAGGATGGACGCCTGGGAAAACACCCATGTCAGGACCAAGAAGTGCAGTTTCCTACCAATATTCTGCAGCTTATCGGTATCCTTATCGCCCCCAAACTCCTGCGGTGGATGGTCAGTCTATGGACTACTCGGAAACTTCATATGCCCCTTCTCTTGAAGGATTTGAGATTGAGGAAGTGGTTGATGAGCCAGTTTTAGGATCCAAGTACGCAAACCCATGGTTGCGTGAGGTTGCAGTGCTCTCGTGGCGAACAGCACTAAATGTAATTCGCACCCCGGAACTCTTCCTCTCCCGTGAGATTGTGTTAACTGTTATGGCACTCATCCTGTCCAGCATTTTTGGAAATCTGAGTCATCATTCTTTCAAAGACATCAATAGGCTCCTCAATTTCTACATCTTTGCGGTGTGCCTTGTTTTCTTTTCCTCCAATGACGCAGTCCCATCTTTCATCATGGAGAGGTTCATCTTCATCAGGGAGACTTCCCACAACGCTTACCGTGCTTCTTCATATGTTATTTCTTCCCTCATTGTTTACCTCCCATTTTTCGCTGTTCAAGGACTCACATTTGCTGCCATAACCAGAGAAATGCTCCGGTTGAAAAGCAGTCTCTGGTATTTCTGGCTCACACTTTATGCCTCGCTTATTACCACTAATGCATATGTGATGCTTGTCAGTGCGCTTGTGCCTAGTTACATCACAGGGTATGCAGTAGTCATAGCCACAACAGCACTCTTCTTTTTGACCTGCGGTTTCTTCCTCAAGCAAACTCAGATACCCATTTATTGGAGGTGGCTTCACTATGTTTCTGCAATCAAATACCCATTTGAGGCATTGCTAACAAATGAATTCAAGAACCTCGACTGCTACACAGGAAACAAAGCAGAATTATCCCCCGGACCATTAGGAGACTTGAAGCCCAGCAAACATCATAACTCCAGTCTGCCAGATAACTGCTTGTTAGGTGTAGATATCTTGTCCTCGATGGATATCAAAATGCAAAACATATGGTATGACATTTTAATCCTGCTGGGTTGGGGTGTTCTTTACAGGTTGTTCTTCTATTTGGTTTTGAGATTTTACTCCAAGAACGAGAGAAAATGA 2451 0.4512 MARPMARPERTRRNKSLETLMDSDKPGIGRNVNQLGPQKFTPGYGLEFSNISYSVIKKQKKDGVWINKETYLLHDISGQAVKGEIMAVMGPSGAGKSTFLDALAGRIARGSLEGSVRIDGKPITTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRAEKKKRVYELLDQLGLQSATHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARGGSVVLMTIHQPSFRIQMLLDQITVLARGRLIYMGKPDALQAHMSRFGRPVPDGENSIEYLLDVISEYDQATVGLDPLIQFQRDGLKPDPAAMTPVPKTPRTSFRRNTPASKHLISLRSQGFTAGTQQPHSAQFSYRDEDDDDDNFDNSLERNSVPTPRNMTSGVHPRLASQFYKDFSAKDFSIWLYHGVVGTPRRQPSWTPARTPGWTPGKTPMSGPRSAVSYQYSAAYRYPYRPQTPAVDGQSMDYSETSYAPSLEGFEIEEVVDEPVLGSKYANPWLREVAVLSWRTALNVIRTPELFLSREIVLTVMALILSSIFGNLSHHSFKDINRLLNFYIFAVCLVFFSSNDAVPSFIMERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAAITREMLRLKSSLWYFWLTLYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKQTQIPIYWRWLHYVSAIKYPFEALLTNEFKNLDCYTGNKAELSPGPLGDLKPSKHHNSSLPDNCLLGVDILSSMDIKMQNIWYDILILLGWGVLYRLFFYLVLRFYSKNERK 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00038 816 ProSitePatterns ABC transporters family signature. 197 211 IPR017871 GO:0005524|GO:0016887
Viun3g00038 816 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 36 803 - -
Viun3g00038 816 SMART AAA_5 82 282 IPR003593 GO:0016887
Viun3g00038 816 Pfam ABC transporter 73 225 IPR003439 GO:0005524
Viun3g00038 816 FunFam ABC transporter G family member 6 61 288 - -
Viun3g00038 816 Gene3D - 46 292 IPR027417 -
Viun3g00038 816 CDD ABCG_EPDR 46 279 - -
Viun3g00038 816 MobiDBLite consensus disorder prediction 330 352 - -
Viun3g00038 816 MobiDBLite consensus disorder prediction 364 407 - -
Viun3g00038 816 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 297 IPR003439 GO:0005524
Viun3g00038 816 Pfam ABC-2 type transporter 527 733 IPR013525 GO:0016020|GO:0140359
Viun3g00038 816 MobiDBLite consensus disorder prediction 440 460 - -
Viun3g00038 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 291 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00038 Viun-Chr3 181988 185577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00038 83 404 Calmodulin-binding Proteins AT2G36910 24.233 1.28e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00038 K05681 - gmx:100819497 1423.3