Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00033 ATGGATTCTTCTATTGCTGACAGAAAAACTGAAGAAGTGAAGGACCGGTATTTGATAAAATACCGTCGAAGAAGGAGAAAACAGAAAATAGAGGCAGAAGATACTAAGGTACACAATGAAGGTGTTCGAATCGTTGACAATGATGAAGGTGACCCAAATGATAATTATTGCAGCAGGAGACCAAAGATAAAAAAAATAGATATAGAAATGATGAGTCCAAACTTGCACACCAACAACAGCAAGTTAATTGAAGAACAGTTGATTAGAGAACGATTCTTATTTTGTCATCAATGTCAGATAAAGGGTAGAGGGAAGACTGTGAGGTGCCAAAACTGTACTATGAGAAGATATTGCGCACCCTGCATACGAAATTGGTATCCTCATTTGAAAGAGGATGACATTTTTGAGTCATGTCCCGTGTGCCGAGGAAATTGCAATTGCGTAGCATGCTTGAGATCCGATATACTTATTAAAGAAATGAAGCAAAAAGCTAAAACCAAAGAAGATGAGCATGTTGAATTCTCTGTGTATTTGCTGCAAACACTTCTTCCACATTTAAGATTGTTGAATGAAGAACAAATGATTGAGAATGAAACAGAAGCTAAGATACAAGGTATCTCAATCTCTGAGCTTAGAATAAAAGAGGCAGGTTATTATAAGGACGAGCGAGTATATTGTGATAATTGTAAAACGTCAATATTTGATTACCACAGAAGTTGTACACTGTGCTCTTTCGATCTTTGTCTCATCTGTTGTCGTGAGCTTCGTAATGGGCAGCTTTTAGGTGGTGCAGAGCCAATTATGTTTGATTTTTCCCATAAAGGTCGCGGTTACTTGCATGGTGAAGAAGTAGTAAATAGAAGGGTAAACCAAACTCAATCAAACGATGTTGCTAAACCTGTAGTTCGTGAATGGTCAAGATTTGGATGGCATGCCGAAAGTAATGGTAGCATTCCATGTCCAAAAGTTAGTGATGAAAGTAACCATGGTTTTCTAGAACTGAGGAGCGTGTTAGGTCAAAATTTTATTTATGATTTATTGTGTAAAGCAAATGAACTAGCACTAAGACACAAACTTGGAACACTTGGCAATTTCTGTACGTGTTCAAGAAACACAAATGTTAGATATCATGGTATGAGGAAGGCTGCATCACGTGCAAATTCTAGTGACAACTATTTGTACTGTCCTAGGGCTGTACAACCCCAGGATGAGGATTTAGAGCATTTTCGGTGGCATTGGAAAAATGGAGAGCCTGTTATTGTTAGCCATGTGATTGATAGTACATCTGGTTTAAGCTGGGAACCATCTGTCATGTGTCGTGCATTGTGTCACATAGCCAAGAGCAGCCATGCACAACATTTGGATGTGAAGGCAATTGATTGCTTAGATTTTTGCGAGGTTAAAATTAAGATCCACGAATTTTTTACTGGGTATAAAGAAGGTCGTGTGGATTGGCTTGATTGGCCTCGCATATTGAAATTAAAAGACTGGCCATCTTCTAATTTATTAGAGGAACGCTTACCTCGACATTGTGCCGAGTTCATATCTTCCTTGCCATTCAAGGAATACACTGATCCATTTGGTGGTTGCCTTAACCTAGCTGTGAAATTGCCTGAAGAGTGTCTAAAGCCAGACTTGGGGCCGAAGACATACATTGCTTATGGATTTCCTCAGGAGCTTGGACGTGGTGATTCTGTGACTAAGCTCCATTGTGATTTGTCTGATGCAGTGAATGTGTTGACTCATATAGCTGAAGTTAAATTGGAAGCGAAGCATCTTACTGCCATTAAGAATTTGAAAGAAAAACACTTGCAGCAAGACAAAAGGGAGTTAGTGAGTGATGATCAGGATGTTGACAAAGTAAATATGAAGCAAGAAAGTGATTTGTTGTTCGCAGGGGATGGTTCAGAAGGTGCACTGTGGGATATCTTTCGGAGGCAGGATGTACCTAAATTGCAGGAGTATCTGAGGAAGCATTTCAAAGAGTTTAGGCATATCCATTGCCGTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTCTATTTGACTGTGGAGCATAAGAGGAAGCTAAAGGAGGAGTATGGAATTGAGCCCTGGACATTTATTCAGAAGCTAGGAGAAGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTTAGAAATCTGAAGTCGTGTAATAAGGTTGCAATGGATTTTGTTTCTCCTGAAAATGTTGGGGAGTGTTTCCGTTTATCCGAGGAATTTCGTACACTTCCAATAAATCATGGGTGTGCTGAGGACAAATTGGAGGTGAAAAAGATGACAGTATATGCTATGCAAGATGTGATAACAAAATTGAAAAGGGCTAGGCCCTTGATTCAGTTATCATTCGTGAAATTGATTATCACTATTCAATTTACAGGTTAG 2415 0.3946 MDSSIADRKTEEVKDRYLIKYRRRRRKQKIEAEDTKVHNEGVRIVDNDEGDPNDNYCSRRPKIKKIDIEMMSPNLHTNNSKLIEEQLIRERFLFCHQCQIKGRGKTVRCQNCTMRRYCAPCIRNWYPHLKEDDIFESCPVCRGNCNCVACLRSDILIKEMKQKAKTKEDEHVEFSVYLLQTLLPHLRLLNEEQMIENETEAKIQGISISELRIKEAGYYKDERVYCDNCKTSIFDYHRSCTLCSFDLCLICCRELRNGQLLGGAEPIMFDFSHKGRGYLHGEEVVNRRVNQTQSNDVAKPVVREWSRFGWHAESNGSIPCPKVSDESNHGFLELRSVLGQNFIYDLLCKANELALRHKLGTLGNFCTCSRNTNVRYHGMRKAASRANSSDNYLYCPRAVQPQDEDLEHFRWHWKNGEPVIVSHVIDSTSGLSWEPSVMCRALCHIAKSSHAQHLDVKAIDCLDFCEVKIKIHEFFTGYKEGRVDWLDWPRILKLKDWPSSNLLEERLPRHCAEFISSLPFKEYTDPFGGCLNLAVKLPEECLKPDLGPKTYIAYGFPQELGRGDSVTKLHCDLSDAVNVLTHIAEVKLEAKHLTAIKNLKEKHLQQDKRELVSDDQDVDKVNMKQESDLLFAGDGSEGALWDIFRRQDVPKLQEYLRKHFKEFRHIHCRPLKQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFIQKLGEAVFIPAGCPHQVRNLKSCNKVAMDFVSPENVGECFRLSEEFRTLPINHGCAEDKLEVKKMTVYAMQDVITKLKRARPLIQLSFVKLIITIQFTG 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00033 804 SMART cupin_9 507 752 IPR003347 -
Viun3g00033 804 Pfam JmjC domain, hydroxylase 639 735 IPR003347 -
Viun3g00033 804 FunFam Transcription factor jumonji domain-containing protein 390 761 - -
Viun3g00033 804 Gene3D Cupin 391 761 - -
Viun3g00033 804 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 93 156 IPR018866 -
Viun3g00033 804 SUPERFAMILY Clavaminate synthase-like 402 771 - -
Viun3g00033 804 ProSiteProfiles Zinc finger RING-type profile. 95 142 IPR001841 -
Viun3g00033 804 ProSiteProfiles JmjC domain profile. 526 752 IPR003347 -
Viun3g00033 804 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 33 785 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00033 Viun-Chr3 163829 170734 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun3g00033 JmjC 2.5e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00033 K15601 - csav:115721711 843.573