Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00031 ATGAGCTCGCAAGAGCGAAGCCAGCGGTCTAGGGTTCCTCGTCAGGAATGGATTCGTCGAGGATCCACCGATCAGAGTCAGATTCAGATTCAGAATCAGAATCAGAATCAGAATGGTGCCGCCGCTGCCGCTGCCGCTGCTGCTGGTTCCTCCAATACAACAAATCGCCATAGGAGGAGCGGTCCTATTCCTAGTCACAATCACAATCCTAATCCCAATCCCAATCCCAATCCCAATCCGAAGAATAATGTGCAGAAGAGATTCAATTCTAGGGATTCTAATTTGCCCCAGTTGCTGCAAGAGATTCAGGAGAAGCTCGTGAAAGGTGCGGTTGAATGCATGATTTGCTGTGACATGGTGCGGAGGTCTGCGCCAATCTGGTCTTGCTCCAGTTGCTTCTCCATCTTTCACCTTAATTGTATAAAGAAGTGGGCGCGGGCTCCCACTTCTGTGGATGTGTCCGTGGACAAGAATCAGCGGTTCAATTGGCGGTGCCCTGGTTGTCAATCTGTGCAGCTCACATCATCCAAGGAGATTCGGTATGTTTGCTTCTGTGGGAAGAGGCCTGACCCCCCCTCCGATTTGTATCTTTTGCCACATTCCTGTGGAGAAGCATGTGCCAAACCCCTTGAAAGGGAGCGGGGGGATAAGGAGGTTCTTTGTCCTCATGTTTGTGTCTTGCAATGCCATCCCGGTCCTTGCCCTCCTTGCAAAGCATTTGCCCCTCCACGTCTGTGTCCTTGTGGGAAGAAAAATGTTACCACCCGTTGCTCTGACCGCCAGTCTGTTCTTACCTGTGGCCAGCGCTGTGAGAAGCTTCTTGAATGTGGGCGGCATCGGTGTGAACAAATCTGTCATCTGGGACCTTGTGATCCTTGTAGGATTCCTGTCAATGCCTCTTGCTTTTGCAGTAAAAGGACGGAGCTCATTCTTTGTGGGGACATGGCTCTGAAAGGTGAAATCAAAACCGAAGGTGGAGTTTTCTCTTGTGGTTCAACCTGTGGAAAGAAACTTGGTTGCGGTAATCATGTTTGTATTGACACTTGTCATCCCGGCAGCTGTGGGGAGTGTGGATTATTACCATCCCATATTAAGACATGCTGTTGTGGGAAAACTAGATTGAAGCAGGAACGGCAGAGTTGTTTAGATCCTATTCCTACCTGTTCACAAGTATGTGGGAAGACCCTTCCTTGCGGGATTCATCACTGTGAAGAGGCATGCCACGCTGGGGATTGTTCTCCTTGTTTGGTTCTAGTCTCCCAGAAGTGTCGATGTGGCTCTACTTCTCGAACTGTGGAGTGCTGTAAGACAAAAGCGGAGGCTGTGAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAGGAATTGTGGAAGGCATAGATGCAGTGAACGGTGTTGTCCACTTTCTAATCCAAATAATATTCAAATTGCAGATTGGGATCCACACTTCTGTTCATTACCATGTGGAAAGAAGCTAAGGTGTGGGCAGCATGCATGTGAATCCCTATGCCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTGACATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCATTGCCTTGTGGCACTCCTCCTCCCTCGTGTCAGCTTCCATGTTCTGTTCCTCAGCCTTGTTTACATCCAGCGTCTCACAGCTGCCATTTTGGGGATTGCCCTCCTTGTTCGGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTAATTCTTCGGAACATACCTTGTGGTTCAAAGGATATTAGATGCAATAAACTATGTGGGAAGACCAGACAGTGCGGTTTACATGCATGTGGTAGAACATGTCACCTCCCACCTTGTGATAATCCATCTACAGTGCCGGGTAGCCGTGCCTCTTGTGGGCAAACATGTGGTGCTCCAAGAAGAGACTGCCGGCATACATGTACAGCTCCTTGTCACCCTTCAACTCCATGTCCAGACACGAGATGCGAATTCCCTGTCACAATTTCATGTTCTTGTGGCCGAATAACAGCGAATGTTCCTTGTGATGCTGGTGGAAGCTGTGCTAATTATAATGCCGATGCTGTACACGAAGCTTCCATTATTCAAAAGTTGCCTGTGTTGCTTCAACCTGTTGCTGCAAATGGAAAGAAAGTTCCCCTTGGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAGTTAGAGCGTAAACGGGTTCTTGCAGATGCCTTTGAGATAACGGCTCCAAATCTGGATTCTCTCCATTTTGGTGACAATCCTGTTGCTTCTGAATTGCTTACTGACATTTTGAGACGTGATCCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAGGTTTTGGTTCTTGGCAAGAACAGGGGAAATACACAAGGTCCAAAAATCCATATTTTCTCTCCTATGTTAAAGGACAAAAGAGATGCAGTAAGGGTCATTGCTGAAAGATGGAAGCTTGCTGTGTATGTAGCTGGTCGTGAGCCAAAGCGTTTTGTAGTTGTTCATGTTACCCCTAAATCAAGAGCTCCTGCTCGTGTGCTAGGGGTTAAGGGTACTACAACTGTTAATGCACCCCTTCCTCCTGCATTTGATCCTTTAGTAGATATGGATCCTCGGCTTGTTGTCTCTTTTCTAGACTTACCAAGGGAGGCAGATATCAGTGCACTGGTGTTGAGATTTGGTGGTGAGTGCGAACTTGTTTGGTTAAATGACAAAAATGCACTGGCTGTTTTTAATGATCCAGCCCGAGCTGCAACTGCAATGAGGAGGTTGGATCATGGTACTGTTTATCAGGGAGCCGTGGTAATGATTGTTCCGAATGTTGGGGCATCAGCAGCATCTTCAGCCACCAATGCTTGGGGAGGATCTGGGACAATGAAAGGAGGAGGATCACTGGCAGCATTGAAGGGTAATCCGTGGAAAAAAGATGTTCAAGAGCCAGGTTGGAAAGATTCCTGGGGTGATGAGGAGTGGGCTACTGCTTCTGCTAATGTGCATTTGCCTATTCAGAAGAAAGATTCCCTCATATCTACTTCAGTAAACCCTTGGAGTGTCTTAAATCAAGAATCTTCTTCAAGTTCATCTGCCGCAGCTGTTAAAGTTGATGTTTCCAGGGAACACTCAGAAAGTAGTGCTGTCACAAACTTGGAGCCTCATAATGGCGGTTCAAATCTAGGACAGCATGCAGGAAACTTGGATACTTTAGAAGATTCTGAGGTAGTAGATGATTGGGAGAAGGCTTGTGAATAG 3261 0.4689 MSSQERSQRSRVPRQEWIRRGSTDQSQIQIQNQNQNQNGAAAAAAAAAGSSNTTNRHRRSGPIPSHNHNPNPNPNPNPNPKNNVQKRFNSRDSNLPQLLQEIQEKLVKGAVECMICCDMVRRSAPIWSCSSCFSIFHLNCIKKWARAPTSVDVSVDKNQRFNWRCPGCQSVQLTSSKEIRYVCFCGKRPDPPSDLYLLPHSCGEACAKPLERELXGDKEVLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNVTTRCSDRQSVLTCGQRCEKLLECGRHRCEQICHLGPCDPCRIPVNASCFCSKRTELILCGDMALKGEIKTEGGVFSCGSTCGKKLGCGNHVCIDTCHPGSCGECGLLPSHIKTCCCGKTRLKQERQSCLDPIPTCSQVCGKTLPCGIHHCEEACHAGDCSPCLVLVSQKCRCGSTSRTVECCKTKAEAVKFTCEKPCGQKRNCGRHRCSERCCPLSNPNNIQIADWDPHFCSLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCLHPASHSCHFGDCPPCSVPVAKECIGGHVILRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLPPCDNPSTVPGSRASCGQTCGAPRRDCRHTCTAPCHPSTPCPDTRCEFPVTISCSCGRITANVPCDAGGSCANYNADAVHEASIIQKLPVLLQPVAANGKKVPLGQRKLMCNDDCAKLERKRVLADAFEITAPNLDSLHFGDNPVASELLTDILRRDPKWVLSVEERCKVLVLGKNRGNTQGPKIHIFSPMLKDKRDAVRVIAERWKLAVYVAGREPKRFVVVHVTPKSRAPARVLGVKGTTTVNAPLPPAFDPLVDMDPRLVVSFLDLPREADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTVYQGAVVMIVPNVGASAASSATNAWGGSGTMKGGGSLAALKGNPWKKDVQEPGWKDSWGDEEWATASANVHLPIQKKDSLISTSVNPWSVLNQESSSSSSAAAVKVDVSREHSESSAVTNLEPHNGGSNLGQHAGNLDTLEDSEVVDDWEKACE 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00031 1087 CDD NF-X1-zinc-finger 267 315 - -
Viun3g00031 1087 MobiDBLite consensus disorder prediction 1046 1069 - -
Viun3g00031 1087 CDD NF-X1-zinc-finger 485 528 - -
Viun3g00031 1087 MobiDBLite consensus disorder prediction 965 993 - -
Viun3g00031 1087 Pfam NF-X1 type zinc finger 399 416 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 Pfam NF-X1 type zinc finger 636 661 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 Pfam NF-X1 type zinc finger 224 239 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 Pfam NF-X1 type zinc finger 560 569 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 Pfam NF-X1 type zinc finger 457 468 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 Pfam NF-X1 type zinc finger 341 358 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 Pfam NF-X1 type zinc finger 495 512 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 Pfam NF-X1 type zinc finger 277 295 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 Pfam NF-X1 type zinc finger 605 620 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 SUPERFAMILY RING/U-box 103 172 - -
Viun3g00031 1087 MobiDBLite consensus disorder prediction 19 66 - -
Viun3g00031 1087 CDD NF-X1-zinc-finger 542 590 - -
Viun3g00031 1087 CDD NF-X1-zinc-finger 632 681 - -
Viun3g00031 1087 MobiDBLite consensus disorder prediction 80 95 - -
Viun3g00031 1087 CDD NF-X1-zinc-finger 331 374 - -
Viun3g00031 1087 ProSiteProfiles Zinc finger PHD-type profile. 110 171 IPR019787 -
Viun3g00031 1087 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 9 994 IPR034078 GO:0003700
Viun3g00031 1087 MobiDBLite consensus disorder prediction 1 95 - -
Viun3g00031 1087 MobiDBLite consensus disorder prediction 1035 1087 - -
Viun3g00031 1087 CDD RING-CH-C4HC3_NFX1-like 112 169 - -
Viun3g00031 1087 ProSiteProfiles Zinc finger RING-type profile. 113 169 IPR001841 -
Viun3g00031 1087 SMART znfxneu3 341 360 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 SMART znfxneu3 495 514 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 SMART znfxneu3 457 487 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 SMART znfxneu3 643 664 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 SMART znfxneu3 552 570 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 SMART znfxneu3 605 634 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 SMART znfxneu3 277 296 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 SMART znfxneu3 399 418 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 SMART znfxneu3 222 240 IPR000967 GO:0005634|GO:0008270
Viun3g00031 1087 CDD NF-X1-zinc-finger 389 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00031 Viun-Chr3 148894 152956 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Viun3g00031 zf-NF-X1 1.7e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00031 K12236 - gmx:106799700 1909.03