Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00029 ATGCAGACACTAAAGGACAAATCTCACTCAAGCTTCACCCGTTGTTGCGCCGCTCCCACTCTCACGCGCCGCCACCGATTCCTCATTCATCCTCATAATCGGTGGTACCTGTTGTGGAAGCACTTCATTCTGATATGGGCCATTTACTCTTCATTCTTCACTCCCATGGAGTTTGGTTTCTTCAGAGGCTTACCTCACAACATATTCCTCCTTGACATAGCGGGGCAATTGGTTTTCTTGATGGACATTTTCTTGCAGTTCTTGGTGGGCTATCACGAAATTCACTCCAACTCCCTCTCCTTGGTCCTCAACCACTACCAGATCGCCGTTAGGTACCTCAGGTCTCGCTTCTTCCTCGACCTCCTCGCATGTCTCCCATGGGACTTCATTTACAAGCGCACCAACAACAACGAGTTTGTCCGCTCTCTGCTTTGGATCAGACTCGCTCGTGCTTCCCGAGTCACCCAATTCTTCGATACCCTCGAGAAGGATACGAGGATCAATTACTTGTTCACCAGAATCCTCAAGCTCTTTGTCGTTGAACTTTACTGCACTCACACCGCTGCTTGCATTTTTTACTATCTTGCCACCACTCTGCCCCCTTCCCAGGAGGGTTACACCTGGATCGGTAGCTTGAAGATGGGTGACTATGCTTATTCTGACTTCCGACACATCGATCTCTGGAAGCGTTATGTCACCTCCCTCTACTTTGCGGTTGTTACCATGGCCACCGTTGGCTACGGAGAAATCCACGCAGTCAACGTGCGTGAAATGATATTCGTCATGATTTATGTCTCCTTTGACATGATTCTTGGCGCTTACCTCCTCGGCAACATGACTGCGTTGATTGTGAAAGGGTCTAAGACAGAGAGATTTAGAGATAAAATGTCTGATATTAGTAAGTTCGTCGATAAGAACAAACTGGACAGCCACATATGTGACCAAATTAAAGATCACTTGAGGTTAAAGTATGATCGGAGTTACAACGGATCTTTTATTCTTCAGGAGATACCAACCACCATTCGCAAGAAGATTTCAATAAGCTTGTACGAACAGTTCATTCAGAAAGTTTCTCTTTTCAAGGGATGCTCTTCAGGGTTTATAAAGCAGATAGCAACCAAAGTAGAGGAAGAGTTTTTCCTGCCAGGAGAACTAGTTACGGAGAAAGGAGATGTCGCAGATAAACTCTACTTTGTATATCATGGTGAGATGCGTGAGATGAGGAGGGAAGAGTGTGATACAGAAGAAGAGACGATCACATTGCATACCTATAGTTCCTTCGGCCATGTTTCTTTTTTTTGCAATATACCTCAAAGTTCTACAGTTGAAGCTCATGAATTTTGCAAGGTTTTGCGACTTGATAAGAAATCCTTTACTGAAATACTCAACATATACTTCTTGGATGGTCGTATTGTGTTGAACAATCTCCGTGAGGTAAAAGACTTAAATTTGCAGCGTAAGCTTTTGTTATCAGACTTCAACCTCACTATTGGAAGCATGGAAATAGAGCTGGCTACAAGGCTCAACTGTGCTGCCCATGATGGCCATCTTGATCTTGTCAAACGTTTGATTGGATTTGGGGCAGATCCCAACAAAACTGATTATGACGGTAGAACTCCCTTGCATATCTCTGCATCAAAAGGATATGTGGATATTTCTTCTTATCTTGTTGAACAAGGAGTATGCATCAATACAGCAGATAAATTTGGCACCAATCCCTTGCTTGAAGCCCTGAAGAACGGACATGAAGATGTAGCATCTGTACTTGTTAACGCGGGAGCTATCCTTGCTGTTGATGACGTTGGCAATTTTCTCTGCATGGCAGTTGCAAGGAAGGAGTTTGACCTTTTGAAAAGGGTTCTAGCTTTTGGTATTAATCCGAATGCCAAAAATTATGATCAGCGCACCCCTCTTCACATTGCTGCCTCTGAAGGCTTCTTTACAATGGTTGAATTACTTCTAGAAGCCGGAGCAAGTGTTTTATCCAAGGACAGATGGGGAAATACACCTCTTCATGAAGCTCATACTGGCGGAAATAGAAATATGATCAAATTGCTTGAAGTTGCAAAAGTTTCTCAGTTGGCTGAATTGTCCGATCTTATTCATGAAAATCAAGCAACGCCAATGCTGCAGTCAACAAATGAAATTCCTAAAAAGAGATGTACAGTGTATCCTTTCCACCCATGGGATCACGAAGCGGGTAAAAGAGAGGGAGTGGTCCTATGGGTTCCACAAAACATTGAAGAACTTATAAAGGAAGCAGGGAAACACTTGGAAACTACGAACAATTCTTATATTTTGACTGAAGAAGGTGGAAAAGTTCTTCACGTAAACATGATTAACAACGATGAGAAGCTATTTCTTGTGAGTGAAGCACAAAATGAGGTGAAATGA 2394 0.4319 MQTLKDKSHSSFTRCCAAPTLTRRHRFLIHPHNRWYLLWKHFILIWAIYSSFFTPMEFGFFRGLPHNIFLLDIAGQLVFLMDIFLQFLVGYHEIHSNSLSLVLNHYQIAVRYLRSRFFLDLLACLPWDFIYKRTNNNEFVRSLLWIRLARASRVTQFFDTLEKDTRINYLFTRILKLFVVELYCTHTAACIFYYLATTLPPSQEGYTWIGSLKMGDYAYSDFRHIDLWKRYVTSLYFAVVTMATVGYGEIHAVNVREMIFVMIYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMSDISKFVDKNKLDSHICDQIKDHLRLKYDRSYNGSFILQEIPTTIRKKISISLYEQFIQKVSLFKGCSSGFIKQIATKVEEEFFLPGELVTEKGDVADKLYFVYHGEMREMRREECDTEEETITLHTYSSFGHVSFFCNIPQSSTVEAHEFCKVLRLDKKSFTEILNIYFLDGRIVLNNLREVKDLNLQRKLLLSDFNLTIGSMEIELATRLNCAAHDGHLDLVKRLIGFGADPNKTDYDGRTPLHISASKGYVDISSYLVEQGVCINTADKFGTNPLLEALKNGHEDVASVLVNAGAILAVDDVGNFLCMAVARKEFDLLKRVLAFGINPNAKNYDQRTPLHIAASEGFFTMVELLLEAGASVLSKDRWGNTPLHEAHTGGNRNMIKLLEVAKVSQLAELSDLIHENQATPMLQSTNEIPKKRCTVYPFHPWDHEAGKREGVVLWVPQNIEELIKEAGKHLETTNNSYILTEEGGKVLHVNMINNDEKLFLVSEAQNEVK 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00029 797 PRINTS EAG/ELK/ERG potassium channel family signature 231 248 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun3g00029 797 PRINTS EAG/ELK/ERG potassium channel family signature 183 193 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun3g00029 797 PRINTS EAG/ELK/ERG potassium channel family signature 72 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun3g00029 797 PRINTS EAG/ELK/ERG potassium channel family signature 275 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun3g00029 797 CDD CAP_ED 359 473 IPR000595 -
Viun3g00029 797 ProSiteProfiles Ankyrin repeat region circular profile. 633 665 - -
Viun3g00029 797 SUPERFAMILY cAMP-binding domain-like 287 477 IPR018490 -
Viun3g00029 797 ProSiteProfiles Ankyrin repeat profile. 633 665 IPR002110 GO:0005515
Viun3g00029 797 PANTHER POTASSIUM CHANNEL AKT1 20 792 IPR045319 GO:0005249|GO:0006813
Viun3g00029 797 ProSiteProfiles Ankyrin repeat region circular profile. 503 534 - -
Viun3g00029 797 Pfam Cyclic nucleotide-binding domain 379 463 IPR000595 -
Viun3g00029 797 Gene3D Jelly Rolls 330 491 IPR014710 -
Viun3g00029 797 ProSiteProfiles Ankyrin repeat profile. 536 568 IPR002110 GO:0005515
Viun3g00029 797 FunFam Potassium channel KAT2 347 483 - -
Viun3g00029 797 ProSiteProfiles Ankyrin repeat region circular profile. 536 568 - -
Viun3g00029 797 Gene3D - 38 285 - -
Viun3g00029 797 SUPERFAMILY Voltage-gated potassium channels 30 284 - -
Viun3g00029 797 Pfam KHA, dimerisation domain of potassium ion channel 719 788 IPR021789 -
Viun3g00029 797 ProSiteProfiles Ankyrin repeat profile. 503 535 IPR002110 GO:0005515
Viun3g00029 797 Pfam Ankyrin repeats (3 copies) 606 686 IPR002110 GO:0005515
Viun3g00029 797 Pfam Ankyrin repeats (3 copies) 510 594 IPR002110 GO:0005515
Viun3g00029 797 ProSiteProfiles KHA domain profile. 720 797 IPR021789 -
Viun3g00029 797 ProSiteProfiles cAMP/cGMP binding motif profile. 359 462 IPR000595 -
Viun3g00029 797 SMART ANK_2a 503 532 IPR002110 GO:0005515
Viun3g00029 797 SMART ANK_2a 600 629 IPR002110 GO:0005515
Viun3g00029 797 SMART ANK_2a 633 662 IPR002110 GO:0005515
Viun3g00029 797 SMART ANK_2a 536 565 IPR002110 GO:0005515
Viun3g00029 797 SMART ANK_2a 666 695 IPR002110 GO:0005515
Viun3g00029 797 SMART ANK_2a 569 598 IPR002110 GO:0005515
Viun3g00029 797 SUPERFAMILY Ankyrin repeat 485 686 IPR036770 -
Viun3g00029 797 Gene3D - 498 601 IPR036770 -
Viun3g00029 797 Gene3D - 602 707 IPR036770 -
Viun3g00029 797 Pfam Ion transport protein 38 283 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun3g00029 797 SMART cnmp_10 359 477 IPR000595 -
Viun3g00029 797 PRINTS Ankyrin repeat signature 537 552 IPR002110 GO:0005515
Viun3g00029 797 PRINTS Ankyrin repeat signature 649 663 IPR002110 GO:0005515
Viun3g00029 797 ProSiteProfiles Ankyrin repeat profile. 569 601 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00029 Viun-Chr3 134201 139170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00029 608 686 Ion Channels AT5G37500 30.693 4.90e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00029 K21867 - gmx:100798698 1243.8