Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00027 ATGGTGGTGGGTTGGAGAAGACTGAGAAGAGGGAAGAAGAAGAAGAAGGAGAAGGAAGAAAAGGTGGAGGAGGAGGAGGTGGTGACTCCCAACCATTTCCGGTGCCCAATTTCTCTGGAGTTGATGAAAGACCCCGTCACGCTCAGCACCGGCATCACATACGATAGAGAATCCATTGAAACGTGGTTCGACCAAGGCAGCTTCACATGCCCCCTCACCAACAACCTCGTATCCAACTCCGACCTCATTCCCAACCACACGCTTAGGATGATAATCCAAGATTGGTGCGTGGAGAATCAGCGGTGCGGCGTTCAGAGAATCCCAACCCCGAGAGTACCCATCACCCCCAACGACGTGCACCATCTTCTTCTCCTTCTGCATGCCAAGGCCTCGCGTCTCGACCAAGACGCGTGCCTTCAACTGGTGCATAAAATTCAGAGGTGGGGTGCAGAGAGCCACAGAAACATGCGCTGTTTAGTGGATAACGGAGCTCCAACTGCATTAGCCTCTGCGTTTTATGCATTTGCTAATGCTGATGTTAATGCTGATGACGATTCCGTGGAGAGGAATCCTTATGTGTGCGTGCTTCATCAAATGTTGTCGGCTCTCAACTCCATGTTTCCGACCCAATCGGAACCCATCCAACATTTGGGGTCTCCTCCTTCTTTACGTTGTATTGTGTCTTTCCTCAGGCGACAGGATCTCTCGGGGAAAGAAAGCTCAATCGTCGCACTCAAACACCTTCTTTCTTTTGGTCATCATCAGCACCTCGAGGCTTTGGCGCAAATTGAAGGAATTAATCAACTTTTGGTCGAATTTCTTAACCCAAGAATTTTTAGTCCGACCATTGTTAAAGCATCCTTGGCGGTGGTTTGGTATTTGGTTTCGTCGTCCTCTCCTTGTACCCACAAAATGAGATTGAAGTTTGTTGAATTGGGTATGGTTTGTGTGGTGGTCGACATTCTCGTCGACTCCGAAAGGAGCCTCTGTGAGAGGGCTCTCGGTGTTCTTGAGTCCCTCTGCGCTTGTGAAGAAGGAAGAGAAAAGGCTTATGGCAATGCGTTGGCGATTCCTCTTCTGGTGAAGAAGCTTCTGCGAGTTTCGCCGTTGGGCTCGGATTACTCTGTTTGTGCCATTTGGAGGCTCTGCAAATTTGGAGAAGAGATGGCTCTGCTGGAGGCCCTGCAAGTGGGTCTCTTTCAGAAGCTTTTGCTGGTATTGCAGGTTGGTTGTGGTGATGACACCAAGGAGAAAGCAACCCAGCTTCTCAAATTGCTCAACCCTTACCGGGGCAGCGCCGTAGAATGCGTGGATTCCGATTTCAAGAACCTTAAAAGATCAATGTAA 1347 0.4952 MVVGWRRLRRGKKKKKEKEEKVEEEEVVTPNHFRCPISLELMKDPVTLSTGITYDRESIETWFDQGSFTCPLTNNLVSNSDLIPNHTLRMIIQDWCVENQRCGVQRIPTPRVPITPNDVHHLLLLLHAKASRLDQDACLQLVHKIQRWGAESHRNMRCLVDNGAPTALASAFYAFANADVNADDDSVERNPYVCVLHQMLSALNSMFPTQSEPIQHLGSPPSLRCIVSFLRRQDLSGKESSIVALKHLLSFGHHQHLEALAQIEGINQLLVEFLNPRIFSPTIVKASLAVVWYLVSSSSPCTHKMRLKFVELGMVCVVVDILVDSERSLCERALGVLESLCACEEGREKAYGNALAIPLLVKKLLRVSPLGSDYSVCAIWRLCKFGEEMALLEALQVGLFQKLLLVLQVGCGDDTKEKATQLLKLLNPYRGSAVECVDSDFKNLKRSM 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00027 448 CDD RING-Ubox_PUB 30 82 IPR045210 -
Viun3g00027 448 SUPERFAMILY RING/U-box 18 104 - -
Viun3g00027 448 Gene3D - 125 428 IPR011989 -
Viun3g00027 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 106 IPR013083 -
Viun3g00027 448 SUPERFAMILY ARM repeat 134 426 IPR016024 -
Viun3g00027 448 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842|GO:0016567
Viun3g00027 448 PANTHER WDSAM1 PROTEIN 26 427 IPR045185 GO:0061630
Viun3g00027 448 Pfam U-box domain 30 100 IPR003613 GO:0004842|GO:0016567
Viun3g00027 448 Coils Coil 8 28 - -
Viun3g00027 448 FunFam RING-type E3 ubiquitin transferase 29 101 - -
Viun3g00027 448 SMART Ubox_2 32 95 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00027 Viun-Chr3 132423 134091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00027 24 446 U-box Gene Family AT5G37490 39.529 2.21e-103 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00027 - - vun:114179193 846.654