Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00021 ATGACTATAGTAGTCATTGCAGATGCGAACAAAGGTGTTGGGTTATATAGTTTATGCACTCTGCGCTTCGTAGCAGCAAGAGAGAAAAAAAAAATGGAAGGAGGATCTGGCGAGAAGTGGAAGAGCGTCTACAGAGAGTGTTTGAGAAACCATGCAGCCAGCCTCGGAAGCTACGCCACCGACGGGTGCGGGGAGTTCACGGTGGATGGAGGGGGGTTGCAATGCGCGGCCTGCGGTTGCCACCGGAACTTCCACCGGAAAGTGAAGTACCCGGTGGGTCCGGAGAGTCCTGGAGGGATGGATTACGGTGGCGAGGGAGGGAGTAAGAAGCGGTTCAGGTCGAAATTCAGCACAGATCAGAAGGAGAAGATGCTGGCGTTTGCGGAGAAACTTGGTTGGAAGCTTCAGAGGAAGGATCTGGATGATGAGATCGAGAGGTTCTGCAGAAGCATTGGAGTTAGTAGACAAGTCTTCAAAGTTTGGATGCATAACCATAAGAACTCTTCTTCCTCTTCTTCTGCATCTGCTTCTGCTTCCACAGGAAACATCTCCTCCCTCACCCATTAA 567 0.5097 MTIVVIADANKGVGLYSLCTLRFVAAREKKKMEGGSGEKWKSVYRECLRNHAASLGSYATDGCGEFTVDGGGLQCAACGCHRNFHRKVKYPVGPESPGGMDYGGEGGSKKRFRSKFSTDQKEKMLAFAEKLGWKLQRKDLDDEIERFCRSIGVSRQVFKVWMHNHKNSSSSSSASASASTGNISSLTH 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00021 188 SUPERFAMILY Homeodomain-like 97 167 IPR009057 -
Viun3g00021 188 NCBIfam homeobox domain, ZF-HD class 109 167 IPR006455 -
Viun3g00021 188 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 168 - -
Viun3g00021 188 FunFam Zinc-finger homeodomain protein 2 100 171 - -
Viun3g00021 188 Pfam ZF-HD protein dimerisation region 43 88 IPR006456 -
Viun3g00021 188 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 44 87 IPR006456 -
Viun3g00021 188 MobiDBLite consensus disorder prediction 166 188 - -
Viun3g00021 188 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 44 88 IPR006456 -
Viun3g00021 188 Gene3D - 98 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00021 Viun-Chr3 102891 103610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00021 44 168 ZF-HD Transcription Factor Family AT4G24660 44.048 2.78e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun3g00021 ZF-HD_dimer 3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00021 - - pvu:PHAVU_002G332400g 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00021 3 102891 103610 Viun4g00467 4 3054296 3055344 PCT