Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00020 ATGGCTTCCCTAGTAAGGATTGACACGTTGCTCAACAACTCATCGCTTCCCTCTTCTCAGCCCTTTTCCTGCGCCCAGAATGCTACCACTGCCACTAATAAAAGGAAGAGAAGGCCTGCGGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCACCCAAGACCTTGCTTGAATCAGATCGCTACGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGCCGCCACAAGGTGCCGTGGAAGCTCTTGAAGAGGGAGACGCCGCTGGTGAAGAAGCGGGTCTTCGTTTGCCCGGAGCCTACTTGCTTGCACCATGACCCGTGCCATGCTCTGGGTGATCTTGTCGGCATAAAGAAGCACTTCAGAAGAAAACACAGCAGTCACAAGCAATGGGTCTGTGAGAGATGCTCCAAAGGCTACGCAGTGCAGTCTGATTACAAAGCACATCTTAAAACATGTGGCACCCGAGGCCACTCTTGCGATTGTGGCCGCGTCTTCTCAAGGGTGGAGAGCTTTATTGAACACCAAGACGCGTGCAACGTGGGGCGGTTGGGGCCAGAAACGCAGGCAGTGCAAGCTGCTGCCGTATGCTTGTCTCGAACAGCTTCAAGCCCTTCTAGCGAAAACAATTTCAGCACAGGTGCCCCCTTGCAAATCGGTGTAATAGTTCCAAAGCCCCCGGAAACATGTACAGTAGTAGAACCGGCCTTGTTCAGCAACACTACCACTGCACAAACCAACAACGACAGCAAAGTGAACAAACTCCAACCCAACCTTGAGCTTCAGCTCTCTACAGCCTCAGGCACAGGCAATAAGAGTGAGGGAAACCCCTGTGCACAGTTGCAGTTATCGATAGGGTCATTGGAAAAAGGGTGCATGAGGGAGAAGTGGTTGGGAGAAAGGGTTGAAGATGAGGCACGTGAGCAGCTGAGGATGGCGGTGGCGGAAAAAGCGTATGCGGAAGAGGCAAGGAAGCACGCTAAGAGGCAGATGGAGCAGGCGGAACTGGAGTTCACTAATGCCAAAAGGATAAGACAACAAGCTCTAGCGGAACTGGACAAAGCCTGTGCCTTGAAGGACCATGCAATCAAACAGATCAATTCAACTATGCTTCAAATCACCTGTCTTGCTTGCAAGCACCATTTCCAAACTGCTCCTTCCGACCACACCTCTTTCGTCTTCAGCTACATTACAAGAGACGCTGCCCAACCTGGAAAACATCGTCTCAAAGCCATTAATTAA 1269 0.5169 MASLVRIDTLLNNSSLPSSQPFSCAQNATTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPLVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSSHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLGPETQAVQAAAVCLSRTASSPSSENNFSTGAPLQIGVIVPKPPETCTVVEPALFSNTTTAQTNNDSKVNKLQPNLELQLSTASGTGNKSEGNPCAQLQLSIGSLEKGCMREKWLGERVEDEAREQLRMAVAEKAYAEEARKHAKRQMEQAELEFTNAKRIRQQALAELDKACALKDHAIKQINSTMLQITCLACKHHFQTAPSDHTSFVFSYITRDAAQPGKHRLKAIN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00020 422 FunFam protein indeterminate-domain 12-like 42 110 - -
Viun3g00020 422 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 375 IPR031140 -
Viun3g00020 422 Pfam Zinc-finger of C2H2 type 63 81 - -
Viun3g00020 422 Gene3D Classic Zinc Finger 41 104 - -
Viun3g00020 422 Gene3D Classic Zinc Finger 125 203 - -
Viun3g00020 422 MobiDBLite consensus disorder prediction 18 36 - -
Viun3g00020 422 Coils Coil 326 360 - -
Viun3g00020 422 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Viun3g00020 422 SUPERFAMILY beta-beta-alpha zinc fingers 60 86 IPR036236 -
Viun3g00020 422 MobiDBLite consensus disorder prediction 18 50 - -
Viun3g00020 422 SMART c2h2final6 104 134 IPR013087 -
Viun3g00020 422 SMART c2h2final6 63 85 IPR013087 -
Viun3g00020 422 SMART c2h2final6 140 167 IPR013087 -
Viun3g00020 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00020 Viun-Chr3 90648 93333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00020 30 407 C2H2 Transcription Factor Family AT2G01940 55.611 5.49e-140 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun3g00020 zf-met 0.023 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00020 K25871 - gmx:100798167 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00020 3 90648 93333 Viun3g00020 3 90648 93333 ECH
Viun3g00020 3 90648 93333 Viun4g00471 4 3116479 3119900 PCT