Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00018 ATGGCGGACTCTAACACAAGCTCAGTTGATGTGATTTTGGAGTTTCTTCGGAGGAACCGATTCACGAGAGCCGAGGCAGCTCTGCGCAGTGAGATCAATAATCGCCCTGACTTGAATGGCTTCCTTCAGAAGCTCACATTGGAAGAAAAAGCCTCACGTGATGTGCCTCAAAGTAATAAGGGGAAGCCTGTGCTTGAGTTTCAAGCGGTGGACACTCTTGAAGTTTCTAAAGAACTGATCGTCACGGAAATCGAGTGTGGGAATGGTCGAAATGCCGCCGAAAGAAAATGGAAAACTGCTGCTCCCACTTTGGTGGAACGGAGTAAATCGGATGAAGCGGTTGGAACTGGTGATAAGAACTTCATTTTCTCCAAGACTTCAGAGGATGGCATGCTTGATTTACACACTTGGAAGTTCAACCCTGGCAAAGCCCCTGTGGAGCCTTACCAAAACGATGCTGGTAGCAGGGCTAATACTGCTTTAAGCATGAAGGCCACAGTATCTCAACAATCGAAACGTCAAACTAATGAAGCTGTGGATCCAAGTGTTGCCAATACCAGTTCAAAGTCTGGGGAGGAAAATGCTGCTCTTGTTGACAAAAAATCTCTGTGGTCTGGAAGTAGTAGTAAAACCTCTGTGGATCTTAAGTACGACCTTGTGCAAAGCAAAGAACCTATGGAACTCGATCGGCAACTTAAATTCAATAATTCATCTCTTAAAGGGAACTTTCCAGATAATCCCTGGTCAAAAATGGATGAGAATGTGAATTCGTCTTCAGATTCCTGCAAAAATTGTGTCAAGACGGTATTCCCCTTCTCGAAAGGGGATGTGTCTACAAACTTCGATGGTGCAACTTATTCTGACAAAAAGGAGGAGAAAAAAGGGGTAGAAATTAGTGATACCAGAACATCCATAAAAGAGCAGGTGGATGAATCAGGGAGGTCTATTTACTTGGTCAAGACACCTGTCAGTTCTGAACAAAAGTTGACTGGCAGTTTAAGGTTTCCTCTTCCACCTGAAAATGAGAAGGAAGAATTTCCCAGGCTTCCTCCTGTTAAACTCAAGTCAGATGATAAGCCCTTGGTTGTTAACTGGGAAGAGAAGTTTGAGCGAGATGGGCCAACTTCAAAACCCCCGGGTACTGACAGCACTTTTCTTATTGGTTCGTATCTGGATGTACCTATTGGACAAGATATTAATCCTTCAGGTGTGAGGAGGGCTACAGGGGGCAGTTGGTTATCTGTAAGTCAAGGGATAGCGGAGGACACATCTGATCTTGTATCGGGATTTGCTACAGTTGGCGATGGGTTGAGTGAATCTATTGACTATCCGAATGAATATTGGGACTCCGACGAATATGATGATGATGAGGACGTTGGGTACATGAGGCAACCTATTGACGATGAGACCTGGTTTTTGGCACATGAAATTGATTACCCTAGTGACAATGAAAAAGGGGCTGGGCATGAAAGTGTTCCGGATCATCAGGAAAGAGGTCTGGCCAAAGATGAGGATGATGATCAATCTTTTGCTGAGGAAGATTCTTACTTTTCTGGGGAGCGATATCTTCAGGCAAATAATGTTGAGCCAGTCACAGCTACTGATGATTCTATTGGTCTGACAGTTACTGAGTATGGAAGGACCAATGATAATGATTTAATGGCTCAATATGATGGACAATTGATGGATGAAGAAGAATTGAACCTTATGTGTGCAGAACCCGTCTGGCGGGGCTTTGTCCCTCAGACTAATGAACTCATCATGCTAGGAGATGGGAGGGTGTTGAATGATAATGTAAGATCACGGCTAGAGAAAATCAAAATGGATGATGATCAACATGGTTCGGTTAGGTCAATTGGGGTAGGGATCAATAGTGATGCTGCAGATATTAGTAATAAAGTGCGTGAAAGTTTGGTTGGTGGTAGTAGTGAAGGAGATTTAGAATATTTCCACGATGTCGGGTTTGGTGGCAGGCACTCCCATCGTGATTTGGACAAGAAATCTACTAACAAATCAAATATAAGTAAGAACAATGACCAGAGTGAGTCAAATAAATATGTCATAGGATGTGACAGAGATGCACAGTTCCAGATAAAAACTCATGGTGATGGGAACTTCTCTTTTCCCCTATCTTTGAAGGATGGTGAGATAATTCAGGCTTCCACCGATAAGTCCCTGTGGTCAAATAACGACAATGCAGATGAAATTGATGACTGCCTTAGTGCATTTGTGGAAACTGATGACATGCTTGCTTCGTGGAGGCGAAAGAGTAGTGATTCATCACCTGCTAGAAGTTCTAGGGGTGATAATAATGCTAACAATGTAAGATCCGCAAACTCTTCTCCAACAACAATTTCAAATTATGGATATTCTGAAAGAGAGCGTGTGAAGGTGGAGGAGGATGAAAACACTGGAATTACTAGGGAAGATGAGCTAGGAGCAGAGGATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGCTAAAGGCACAGGAGGAGGAATTTGAAACTTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGTTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGAAGGTATCATGTTACGGAGTATCTGGGATCTGCTGCATTTAGCAAAGCCATACAAGCTCATGACCTACATACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAGGACTTCTTTGACCAAAGTCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGGAGACAAGTATCACATTCTTCGATTATATGATTATTTCTATTATCGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCAAACTTGTACGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCATAGCCTTGGACTAATACACTGTGACTTGAAACCGGAGAATATTTTGGTTAAGAGCTATAGTAGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACGGATCACCTTTGCTCTTATGTTCAGTCAAGGTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGATAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATGTCCTCTTGCAAAATGATTCCCCTGCAACATTACTTGCGCGGGTGATTGGGATCATTGGTCCAATTGATCAAGGTATGCTTGCAAAAGGACGGGACACCTATAAGTACTTCACCAAAAATCATATGCTTTATGAAAGAAATCAGGAAACCAACAGGTTAGAATATTTGATTCCAAAAAAGACATCCTTGAGGCATAGATTGCCAATGGGAGACCAAGGCTTCATTGACTTTGTGGCTCACTTGCTTGAAGTCAACCCTAAGAAGCGACCCTCTGCATCTGAAGCCCTGAAGCATCCATGGTTATCGTACCCTTATGAACCCATATCATCTTGA 3546 0.4213 MADSNTSSVDVILEFLRRNRFTRAEAALRSEINNRPDLNGFLQKLTLEEKASRDVPQSNKGKPVLEFQAVDTLEVSKELIVTEIECGNGRNAAERKWKTAAPTLVERSKSDEAVGTGDKNFIFSKTSEDGMLDLHTWKFNPGKAPVEPYQNDAGSRANTALSMKATVSQQSKRQTNEAVDPSVANTSSKSGEENAALVDKKSLWSGSSSKTSVDLKYDLVQSKEPMELDRQLKFNNSSLKGNFPDNPWSKMDENVNSSSDSCKNCVKTVFPFSKGDVSTNFDGATYSDKKEEKKGVEISDTRTSIKEQVDESGRSIYLVKTPVSSEQKLTGSLRFPLPPENEKEEFPRLPPVKLKSDDKPLVVNWEEKFERDGPTSKPPGTDSTFLIGSYLDVPIGQDINPSGVRRATGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESIDYPNEYWDSDEYDDDEDVGYMRQPIDDETWFLAHEIDYPSDNEKGAGHESVPDHQERGLAKDEDDDQSFAEEDSYFSGERYLQANNVEPVTATDDSIGLTVTEYGRTNDNDLMAQYDGQLMDEEELNLMCAEPVWRGFVPQTNELIMLGDGRVLNDNVRSRLEKIKMDDDQHGSVRSIGVGINSDAADISNKVRESLVGGSSEGDLEYFHDVGFGGRHSHRDLDKKSTNKSNISKNNDQSESNKYVIGCDRDAQFQIKTHGDGNFSFPLSLKDGEIIQASTDKSLWSNNDNADEIDDCLSAFVETDDMLASWRRKSSDSSPARSSRGDNNANNVRSANSSPTTISNYGYSERERVKVEEDENTGITREDELGAEDEEVAAVQEQVRQLKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLLQNDSPATLLARVIGIIGPIDQGMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00018 1181 ProSitePatterns Serine/Threonine protein kinases active-site signature. 996 1008 IPR008271 GO:0004672|GO:0006468
Viun3g00018 1181 MobiDBLite consensus disorder prediction 163 193 - -
Viun3g00018 1181 ProSiteProfiles Protein kinase domain profile. 870 1172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00018 1181 PANTHER DUAL SPECIFICITY PROTEIN KINASE 411 1172 - -
Viun3g00018 1181 Gene3D Transferase(Phosphotransferase) domain 1 924 1172 - -
Viun3g00018 1181 MobiDBLite consensus disorder prediction 755 790 - -
Viun3g00018 1181 CDD PKc_DYRK_like 870 1172 - -
Viun3g00018 1181 Pfam Protein kinase domain 870 1172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00018 1181 FunFam Serine/threonine-protein kinase ppk15 949 1173 - -
Viun3g00018 1181 MobiDBLite consensus disorder prediction 792 810 - -
Viun3g00018 1181 MobiDBLite consensus disorder prediction 482 512 - -
Viun3g00018 1181 SUPERFAMILY Protein kinase-like (PK-like) 859 1174 IPR011009 -
Viun3g00018 1181 Coils Coil 812 842 - -
Viun3g00018 1181 Gene3D Phosphorylase Kinase; domain 1 864 951 - -
Viun3g00018 1181 FunFam Putative serine/threonine-protein kinase dyrk2 864 951 - -
Viun3g00018 1181 MobiDBLite consensus disorder prediction 753 816 - -
Viun3g00018 1181 MobiDBLite consensus disorder prediction 482 505 - -
Viun3g00018 1181 MobiDBLite consensus disorder prediction 163 195 - -
Viun3g00018 1181 MobiDBLite consensus disorder prediction 659 681 - -
Viun3g00018 1181 SMART serkin_6 870 1172 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00018 Viun-Chr3 69886 79377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00018 869 1167 MAP Kinase Gene Family AT5G19010 30.721 1.61e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Viun3g00018 Pkinase 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00018 - - gmx:100797095 1814.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04288 3 50613922 50618815 Viun3g00018 3 69886 79377 ECH
Viun3g00018 3 69886 79377 Viun3g00018 3 69886 79377 ECH
Viun3g00018 3 69886 79377 Viun4g00486 4 3194613 3202308 PCT