LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g00017	ATGGCGGACTCTAACACAAGCTCAGTTGATGTGATTTTGGAGTTTCTTCGGAGGAACCGATTCACGAGAGCCGAGGCAGCTCTGCGCAGTGAGATCAATAATCGCCCTGACTTGAATGGCTTCCTTCAGAAGCTCACATTGGAAGAAAAAGCCTCACGTGATGTGCCTCAAAGTAATAAGGGGAAGCCTGTGCTTGAGTTTCAAGCGGTGGACACTCTTGAAGTTTCTAAAGAACTGATCGTCACGGAAATCGAGTGTGGGAATGGTCGAAATGCCGCCGAAAGAAAATGGAAAACTGCTGCTCCCACTTTGGTGGAACGGAGTAAATCGGATGAAGCGGTTGGAACTGGTGATAAGAACTTCATTTTCTCCAAGACTTCAGAGGATGGCATGCTTGATTTACACACTTGGAAGTTCAACCCTGGCAAAGCCCCTGTGGAGCCTTACCAAAACGATGCTGGTAGCAGGGCTAATACTGCTTTAAGCATGAAGGCCACAGTATCTCAACAATCGAAACGTCAAACTAATGAAGCTGTGGATCCAAGTGTTGCCAATACCAGTTCAAAGTCTGGGGAGGAAAATGCTGCTCTTGTTGACAAAAAATCTCTGTGGTCTGGAAGTAGTAGTAAAACCTCTGTGGATCTTAAGTACGACCTTGTGCAAAGCAAAGAACCTATGGAACTCGATCGGCAACTTAAATTCAATAATTCATCTCTTAAAGGGAACTTTCCAGATAATCCCTGGTCAAAAATGGATGAGAATGTGAATTCGTCTTCAGATTCCTGCAAAAATTGTGTCAAGACGGTATTCCCCTTCTCGAAAGGGGATGTGTCTACAAACTTCGATGGTGCAACTTATTCTGACAAAAAGGAGGAGAAAAAAGGGGTAGAAATTAGTGATACCAGAACATCCATAAAAGAGCAGGTGGATGAATCAGGGAGGTCTATTTACTTGGTCAAGACACCTGTCAGTTCTGAACAAAAGTTGACTGGCAGTTTAAGGTTTCCTCTTCCACCTGAAAATGAGAAGGAAGAATTTCCCAGGCTTCCTCCTGTTAAACTCAAGTCAGATGATAAGCCCTTGGTTGTTAACTGGGAAGAGAAGTTTGAGCGAGATGGGCCAACTTCAAAACCCCCGGGTACTGACAGCACTTTTCTTATTGGTTCGTATCTGGATGTACCTATTGGACAAGATATTAATCCTTCAGGTGTGAGGAGGGCTACAGGGGGCAGTTGGTTATCTGTAAGTCAAGGGATAGCGGAGGACACATCTGATCTTGTATCGGGATTTGCTACAGTTGGCGATGGGTTGAGTGAATCTATTGACTATCCGAATGAATATTGGGACTCCGACGAATATGATGATGATGAGGACGTTGGGTACATGAGGCAACCTATTGACGATGAGACCTGGTTTTTGGCACATGAAATTGATTACCCTAGTGACAATGAAAAAGGGGCTGGGCATGAAAGTGTTCCGGATCATCAGGAAAGAGGTCTGGCCAAAGATGAGGATGATGATCAATCTTTTGCTGAGGAAGATTCTTACTTTTCTGGGGAGCGATATCTTCAGGCAAATAATGTTGAGCCAGTCACAGCTACTGATGATTCTATTGGTCTGACAGTTACTGAGTATGGAAGGACCAATGATAATGATTTAATGGCTCAATATGATGGACAATTGATGGATGAAGAAGAATTGAACCTTATGTGTGCAGAACCCGTCTGGCGGGGCTTTGTCCCTCAGACTAATGAACTCATCATGCTAGGAGATGGGAGGGTGTTGAATGATAATGTAAGATCACGGCTAGAGAAAATCAAAATGGATGATGATCAACATGGTTCGGTTAGGTCAATTGGGGTAGGGATCAATAGTGATGCTGCAGATATTAGTAATAAAGTGCGTGAAAGTTTGGTTGGTGGTAGTAGTGAAGGAGATTTAGAATATTTCCACGATGTCGGGTTTGGTGGCAGGCACTCCCATCGTGATTTGGACAAGAAATCTACTAACAAATCAAATATAAGTAAGAACAATGACCAGAGTGAGTCAAATAAATATGTCATAGGATGTGACAGAGATGCACAGTTCCAGATAAAAACTCATGGTGATGGGAACTTCTCTTTTCCCCTATCTTTGAAGGATGGTGAGATAATTCAGGCTTCCACCGATAAGTCCCTGTGGTCAAATAACGACAATGCAGATGAAATTGATGACTGCCTTAGTGCATTTGTGGAAACTGATGACATGCTTGCTTCGTGGAGGCGAAAGAGTAGTGATTCATCACCTGCTAGAAGTTCTAGGGGTGATAATAATGCTAACAATGTGGAGGAGGATGAAAACACTGGAATTACTAGGGAAGATGAGCTAGGAGCAGAGGATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGCTAAAGGCACAGGAGGAGGAATTTGAAACTTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGTTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGAAGGTATCATGTTACGGAGTATCTGGGATCTGCTGCATTTAGCAAAGCCATACAAGCTCATGACCTACATACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAGGACTTCTTTGACCAAAGTCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGGAGACAAGTATCACATTCTTCGATTATATGATTATTTCTATTATCGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCAAACTTGTACGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCATAGCCTTGGACTAATACACTGTGACTTGAAACCGGAGAATATTTTGGTTAAGAGCTATAGTAGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACGGATCACCTTTGCTCTTATGTTCAGTCAAGGTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGATAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATGTCCTCTTGCAAAATGATTCCCCTGCAACATTACTTGCGCGGGTGATTGGGATCATTGGTCCAATTGATCAAGGTATGCTTGCAAAAGGACGGGACACCTATAAGTACTTCACCAAAAATCATATGCTTTATGAAAGAAATCAGGAAACCAACAGGTTAGAATATTTGATTCCAAAAAAGACATCCTTGAGGCATAGATTGCCAATGGGAGACCAAGGCTTCATTGACTTTGTGGCTCACTTGCTTGAAGTCAACCCTAAGAAGCGACCCTCTGCATCTGAAGCCCTGAAGCATCCATGGTTATCGTACCCTTATGAACCCATATCATCTTGA	3477	0.4222	MADSNTSSVDVILEFLRRNRFTRAEAALRSEINNRPDLNGFLQKLTLEEKASRDVPQSNKGKPVLEFQAVDTLEVSKELIVTEIECGNGRNAAERKWKTAAPTLVERSKSDEAVGTGDKNFIFSKTSEDGMLDLHTWKFNPGKAPVEPYQNDAGSRANTALSMKATVSQQSKRQTNEAVDPSVANTSSKSGEENAALVDKKSLWSGSSSKTSVDLKYDLVQSKEPMELDRQLKFNNSSLKGNFPDNPWSKMDENVNSSSDSCKNCVKTVFPFSKGDVSTNFDGATYSDKKEEKKGVEISDTRTSIKEQVDESGRSIYLVKTPVSSEQKLTGSLRFPLPPENEKEEFPRLPPVKLKSDDKPLVVNWEEKFERDGPTSKPPGTDSTFLIGSYLDVPIGQDINPSGVRRATGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESIDYPNEYWDSDEYDDDEDVGYMRQPIDDETWFLAHEIDYPSDNEKGAGHESVPDHQERGLAKDEDDDQSFAEEDSYFSGERYLQANNVEPVTATDDSIGLTVTEYGRTNDNDLMAQYDGQLMDEEELNLMCAEPVWRGFVPQTNELIMLGDGRVLNDNVRSRLEKIKMDDDQHGSVRSIGVGINSDAADISNKVRESLVGGSSEGDLEYFHDVGFGGRHSHRDLDKKSTNKSNISKNNDQSESNKYVIGCDRDAQFQIKTHGDGNFSFPLSLKDGEIIQASTDKSLWSNNDNADEIDDCLSAFVETDDMLASWRRKSSDSSPARSSRGDNNANNVEEDENTGITREDELGAEDEEVAAVQEQVRQLKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLLQNDSPATLLARVIGIIGPIDQGMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS	1158

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g00017	1158	MobiDBLite	consensus disorder prediction	163	193	-	-
	Viun3g00017	1158	MobiDBLite	consensus disorder prediction	753	793	-	-
	Viun3g00017	1158	ProSiteProfiles	Protein kinase domain profile.	847	1149	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g00017	1158	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	973	985	IPR008271	GO:0004672\|GO:0006468
	Viun3g00017	1158	FunFam	Serine/threonine-protein kinase ppk15	926	1150	-	-
	Viun3g00017	1158	FunFam	Putative serine/threonine-protein kinase dyrk2	841	928	-	-
	Viun3g00017	1158	Coils	Coil	789	819	-	-
	Viun3g00017	1158	SMART	serkin_6	847	1149	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g00017	1158	CDD	PKc_DYRK_like	847	1149	-	-
	Viun3g00017	1158	MobiDBLite	consensus disorder prediction	755	778	-	-
	Viun3g00017	1158	MobiDBLite	consensus disorder prediction	482	512	-	-
	Viun3g00017	1158	SUPERFAMILY	Protein kinase-like (PK-like)	836	1151	IPR011009	-
	Viun3g00017	1158	Gene3D	Transferase(Phosphotransferase) domain 1	901	1149	-	-
	Viun3g00017	1158	Pfam	Protein kinase domain	847	1149	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g00017	1158	Gene3D	Phosphorylase Kinase; domain 1	841	928	-	-
	Viun3g00017	1158	MobiDBLite	consensus disorder prediction	482	505	-	-
	Viun3g00017	1158	MobiDBLite	consensus disorder prediction	163	195	-	-
	Viun3g00017	1158	MobiDBLite	consensus disorder prediction	659	681	-	-
	Viun3g00017	1158	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	411	1149	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g00017	Viun-Chr3	69886	79377	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g00017	846	1144	MAP Kinase Gene Family	AT5G19010	30.721	1.75e-28	120

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-PRP4	Viun3g00017		Pkinase	1.2e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g00017	-		-	gmx:100797095	1763.43