Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00016 ATGGCGGACTCTAACACAAGCTCAGTTGATGTGATTTTGGAGTTTCTTCGGAGGAACCGATTCACGAGAGCCGAGGCAGCTCTGCGCAGTGAGATCAATAATCGCCCTGACTTGAATGGCTTCCTTCAGAAGCTCACATTGGAAGAAAAAGCCTCACGTGATGTGCCTCAAAGTAATAAGGGGAAGCCTGTGCTTGAGTTTCAAGCGGTGGACACTCTTGAAGTTTCTAAAGAACTGATCGTCACGGAAATCGAGTGTGGGAATGGTCGAAATGCCGCCGAAAGAAAATGGAAAACTGCTGCTCCCACTTTGGTGGAACGGAGTAAATCGGATGAAGCGGTTGGAACTGGTGATAAGAACTTCATTTTCTCCAAGACTTCAGAGGATGGCATGCTTGATTTACACACTTGGAAGTTCAACCCTGGCAAAGCCCCTGTGGAGCCTTACCAAAACGATGCTGGTAGCAGGGCTAATACTGCTTTAAGCATGAAGGCCACAGTATCTCAACAATCGAAACGTCAAACTAATGAAGCTGTGGATCCAAGTGTTGCCAATACCAGTTCAAAGTCTGGGGAGGAAAATGCTGCTCTTGTTGACAAAAAATCTCTGTGGTCTGGAAGTAGTAGTAAAACCTCTGTGGATCTTAAGTACGACCTTGTGCAAAGCAAAGAACCTATGGAACTCGATCGGCAACTTAAATTCAATAATTCATCTCTTAAAGGGAACTTTCCAGATAATCCCTGGTCAAAAATGGATGAGAATGTGAATTCGTCTTCAGATTCCTGCAAAAATTGTGTCAAGACGGTATTCCCCTTCTCGAAAGGGGATGTGTCTACAAACTTCGATGGTGCAACTTATTCTGACAAAAAGGAGGAGAAAAAAGGGGTAGAAATTAGTGATACCAGAACATCCATAAAAGAGCAGGTGGATGAATCAGGGAGGTCTATTTACTTGGTCAAGACACCTGTCAGTTCTGAACAAAAGTTGACTGGCAGTTTAAGGTTTCCTCTTCCACCTGAAAATGAGAAGGAAGAATTTCCCAGGCTTCCTCCTGTTAAACTCAAGTCAGATGATAAGCCCTTGGTTGTTAACTGGGAAGAGAAGTTTGAGCGAGATGGGCCAACTTCAAAACCCCCGGGTGTGAGGAGGGCTACAGGGGGCAGTTGGTTATCTGTAAGTCAAGGGATAGCGGAGGACACATCTGATCTTGTATCGGGATTTGCTACAGTTGGCGATGGGTTGAGTGAATCTATTGACTATCCGAATGAATATTGGGACTCCGACGAATATGATGATGATGAGGACGTTGGGTACATGAGGCAACCTATTGACGATGAGACCTGGTTTTTGGCACATGAAATTGATTACCCTAGTGACAATGAAAAAGGGGCTGGGCATGAAAGTGTTCCGGATCATCAGGAAAGAGGTCTGGCCAAAGATGAGGATGATGATCAATCTTTTGCTGAGGAAGATTCTTACTTTTCTGGGGAGCGATATCTTCAGGCAAATAATGTTGAGCCAGTCACAGCTACTGATGATTCTATTGGTCTGACAGTTACTGAGTATGGAAGGACCAATGATAATGATTTAATGGCTCAATATGATGGACAATTGATGGATGAAGAAGAATTGAACCTTATGTGTGCAGAACCCGTCTGGCGGGGCTTTGTCCCTCAGACTAATGAACTCATCATGCTAGGAGATGGGAGGGTGTTGAATGATAATGTAAGATCACGGCTAGAGAAAATCAAAATGGATGATGATCAACATGGTTCGGTTAGGTCAATTGGGGTAGGGATCAATAGTGATGCTGCAGATATTAGTAATAAAGTGCGTGAAAGTTTGGTTGGTGGTAGTAGTGAAGGAGATTTAGAATATTTCCACGATGTCGGGTTTGGTGGCAGGCACTCCCATCGTGATTTGGACAAGAAATCTACTAACAAATCAAATATAAGTAAGAACAATGACCAGAGTGAGTCAAATAAATATGTCATAGGATGTGACAGAGATGCACAGTTCCAGATAAAAACTCATGGTGATGGGAACTTCTCTTTTCCCCTATCTTTGAAGGATGGTGAGATAATTCAGGCTTCCACCGATAAGTCCCTGTGGTCAAATAACGACAATGCAGATGAAATTGATGACTGCCTTAGTGCATTTGTGGAAACTGATGACATGCTTGCTTCGTGGAGGCGAAAGAGTAGTGATTCATCACCTGCTAGAAGTTCTAGGGGTGATAATAATGCTAACAATGTAAGATCCGCAAACTCTTCTCCAACAACAATTTCAAATTATGGATATTCTGAAAGAGAGCGTGTGAAGGTGGAGGAGGATGAAAACACTGGAATTACTAGGGAAGATGAGCTAGGAGCAGAGGATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGCTAAAGGCACAGGAGGAGGAATTTGAAACTTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGTTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGAAGGTATCATGTTACGGAGTATCTGGGATCTGCTGCATTTAGCAAAGCCATACAAGCTCATGACCTACATACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAGGACTTCTTTGACCAAAGTCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGGAGACAAGTATCACATTCTTCGATTATATGATTATTTCTATTATCGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCAAACTTGTACGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCATAGCCTTGGACTAATACACTGTGACTTGAAACCGGAGAATATTTTGGTTAAGAGCTATAGTAGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACGGATCACCTTTGCTCTTATGTTCAGTCAAGGTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGATAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATGTCCTCTTGCAAAATGATTCCCCTGCAACATTACTTGCGCGGGTGATTGGGATCATTGGTCCAATTGATCAAGGTATGCTTGCAAAAGGACGGGACACCTATAAGTACTTCACCAAAAATCATATGCTTTATGAAAGAAATCAGGAAACCAACAGGTTAGAATATTTGATTCCAAAAAAGACATCCTTGAGGCATAGATTGCCAATGGGAGACCAAGGCTTCATTGACTTTGTGGCTCACTTGCTTGAAGTCAACCCTAAGAAGCGACCCTCTGCATCTGAAGCCCTGAAGCATCCATGGTTATCGTACCCTTATGAACCCATATCATCTTGA 3477 0.4222 MADSNTSSVDVILEFLRRNRFTRAEAALRSEINNRPDLNGFLQKLTLEEKASRDVPQSNKGKPVLEFQAVDTLEVSKELIVTEIECGNGRNAAERKWKTAAPTLVERSKSDEAVGTGDKNFIFSKTSEDGMLDLHTWKFNPGKAPVEPYQNDAGSRANTALSMKATVSQQSKRQTNEAVDPSVANTSSKSGEENAALVDKKSLWSGSSSKTSVDLKYDLVQSKEPMELDRQLKFNNSSLKGNFPDNPWSKMDENVNSSSDSCKNCVKTVFPFSKGDVSTNFDGATYSDKKEEKKGVEISDTRTSIKEQVDESGRSIYLVKTPVSSEQKLTGSLRFPLPPENEKEEFPRLPPVKLKSDDKPLVVNWEEKFERDGPTSKPPGVRRATGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESIDYPNEYWDSDEYDDDEDVGYMRQPIDDETWFLAHEIDYPSDNEKGAGHESVPDHQERGLAKDEDDDQSFAEEDSYFSGERYLQANNVEPVTATDDSIGLTVTEYGRTNDNDLMAQYDGQLMDEEELNLMCAEPVWRGFVPQTNELIMLGDGRVLNDNVRSRLEKIKMDDDQHGSVRSIGVGINSDAADISNKVRESLVGGSSEGDLEYFHDVGFGGRHSHRDLDKKSTNKSNISKNNDQSESNKYVIGCDRDAQFQIKTHGDGNFSFPLSLKDGEIIQASTDKSLWSNNDNADEIDDCLSAFVETDDMLASWRRKSSDSSPARSSRGDNNANNVRSANSSPTTISNYGYSERERVKVEEDENTGITREDELGAEDEEVAAVQEQVRQLKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLLQNDSPATLLARVIGIIGPIDQGMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00016 1158 PANTHER DUAL SPECIFICITY PROTEIN KINASE 388 1149 - -
Viun3g00016 1158 Gene3D Transferase(Phosphotransferase) domain 1 901 1149 - -
Viun3g00016 1158 MobiDBLite consensus disorder prediction 163 193 - -
Viun3g00016 1158 MobiDBLite consensus disorder prediction 730 793 - -
Viun3g00016 1158 ProSiteProfiles Protein kinase domain profile. 847 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00016 1158 ProSitePatterns Serine/Threonine protein kinases active-site signature. 973 985 IPR008271 GO:0004672|GO:0006468
Viun3g00016 1158 FunFam Serine/threonine-protein kinase ppk15 926 1150 - -
Viun3g00016 1158 FunFam Putative serine/threonine-protein kinase dyrk2 841 928 - -
Viun3g00016 1158 MobiDBLite consensus disorder prediction 334 353 - -
Viun3g00016 1158 Coils Coil 789 819 - -
Viun3g00016 1158 SMART serkin_6 847 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00016 1158 CDD PKc_DYRK_like 847 1149 - -
Viun3g00016 1158 MobiDBLite consensus disorder prediction 459 486 - -
Viun3g00016 1158 MobiDBLite consensus disorder prediction 732 767 - -
Viun3g00016 1158 MobiDBLite consensus disorder prediction 459 482 - -
Viun3g00016 1158 MobiDBLite consensus disorder prediction 338 353 - -
Viun3g00016 1158 MobiDBLite consensus disorder prediction 636 658 - -
Viun3g00016 1158 SUPERFAMILY Protein kinase-like (PK-like) 836 1151 IPR011009 -
Viun3g00016 1158 Pfam Protein kinase domain 847 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00016 1158 MobiDBLite consensus disorder prediction 769 787 - -
Viun3g00016 1158 MobiDBLite consensus disorder prediction 163 195 - -
Viun3g00016 1158 Gene3D Phosphorylase Kinase; domain 1 841 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00016 Viun-Chr3 69886 79378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00016 846 1144 MAP Kinase Gene Family AT5G19010 30.721 1.75e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Viun3g00016 Pkinase 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00016 - - gmx:100797095 1761.5