Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00012 ATGGAGTATGGGAGTGGAGGCGGTGGCTCTCAGTCTGCAGGGGAACATGATGCTTCGGATTCCCATGAGAAGCGAAAGCGCTATCATCGTCATACTTCCACCCAGATTCAGAGGCTTGAGTCAATGTTCAGAGAGTGTCCCCATCCAGATGAAAAGCAAAGGTTGCAGTTAAGCAGAGAGTTAGGCTTGGCCCCTCGACAGATCAAGTTCTGGTTTCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAGAGAGCTGACAACTGTACTCTTCGGGCTGACAATGACAAGATACGTTGCGAGAACATAGCTATCAGAGAGGCTTTGAAAAACGTTATCTGCCCCTCTTGTGGTGGCCCTCCCCTCAATGATGATTCCTATTTTGACGACCAAAAGTTGCGATTAGAGAATGCTCACCTCAAAGAAGAGCTTGATAGAGTGTCCGGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAGCTCCCTCCTGTTCAGCCTATTCATTTGTCGTCTCTCGACTTGTCGATGTCGTGTTTTGGAAACCAACTGATGGTTGATCATGTTCTTGCACCTTCTCCTTCCCTTAATCTCGATCTTCTCTCTGCGGGGACATCCTCACCCGTGCCAAATTTGCCTTATCAGCCTCCTTACCTTTCTGACATGGACAAGTCCCTCATGTCCGACATTGCTTCCAATGCCATGGAAGAATTACTCAGGCTGGTGCAGACAAACGAACCTTTGTGGCTCAAGTCCAACGTCGATGGGAGAGATGTCCTAAATTCTGATGCCTACGAAAGAATTTTCCCCAAGCCCAATAGTCGCCCCAAGACTCCTAATCTTCGCCTCGAGGCATCACGAGGTTCTGCAGTCGTATTAATGAATAGTTTGGCTTTGGTTGACATGTTTATGGACCCAAACAAGTGGACGGAACTTTTTCCCACTATTGTCTCGGTGGCAACGACTATTCAAGCCATATCTTCAGGGATGATGGGTGGTTCTTTGCAATTGATGTATGCGGAGGTGCAAGTGCTCTCTCCCCTTGTTTCTTCTCGGGAGTTCTACTTCCTTCGCTATTGTCAGCAAATTGAGAAAGGTACATGGGCAGTGGTGGATGTTTCTTACGATTTTCCTCAAGACAGCCACTTTGATCCTCACTTTCGGTCTCATCGTCGTCCTTCTGGTTGCTTGATCCAAGACATGCCGGACGGGCATTCCAAGATTACTTGGGTCGAGCACGTTGAGATCGAAGACAAAACTCTGCCTCATCGGCTTTACAGAAATCTTATTTATAGTGGGATGGCATTTGGAGCTGAAAGATGGCTTGCAACTCTCCAGAGAACGTGTGAAAGACTTACTTATCTGATGGATTCAACCGGGGATAATCCTGGAGGAGTAATTTCATCTGCCGAGGGCAAGAGGAGCATGATGAGACTCGCCGAAAGGATGGTCACGAATTTTTGTGGCAGCATTGGCACTTCAAGTGGCCGGCGATGGACCACAATTTCCGGGTTGAATGAAATATTAATCAGAGTCACTGTCCACAAAAGCTCAAATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTTCCCACCCCTCCACACACTGTCTTCAATTTCTTCAAGGATGAAACAAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCAGTGCAAGAGGTTGCCCAGATAGCGAATGGTCCAAATCCTGGTAACAGCATATCAGTTCTTCGAGCTTTCAACACGAGTCAAAACATGCTAATACTCCAAGAGAGCTGCATAGATTCGTCTGGTTCACTTGTGGTTTATTGCCCAGTTGATCTGCCATCGATCAACATAGCAATGAGTGGTGAAGACACTTCGTGCATTCCATTGCTACCCAATGGGTTTACCATTTTGCCAGATGGGGAGACGGAGCAGGAAGGAGATGGAGCATCAACCAGTTCAAACGCAAACAGGAACAAGGCAAGGTGTGGTGGTTCACTAGTCACAGTTGCATTTCAGATTCTAGTGAGCTCCTCTCCATCTGCCAAGTTGAATATGGAAGTGACAACTGTTTGTAATCTCATTGGCTCCACTGTCCAGCAAATAAAGGCTTCATTCAGTTGTCCTACCTAG 2139 0.4736 MEYGSGGGGSQSAGEHDASDSHEKRKRYHRHTSTQIQRLESMFRECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCTLRADNDKIRCENIAIREALKNVICPSCGGPPLNDDSYFDDQKLRLENAHLKEELDRVSGIAAKYIGRPISQLPPVQPIHLSSLDLSMSCFGNQLMVDHVLAPSPSLNLDLLSAGTSSPVPNLPYQPPYLSDMDKSLMSDIASNAMEELLRLVQTNEPLWLKSNVDGRDVLNSDAYERIFPKPNSRPKTPNLRLEASRGSAVVLMNSLALVDMFMDPNKWTELFPTIVSVATTIQAISSGMMGGSLQLMYAEVQVLSPLVSSREFYFLRYCQQIEKGTWAVVDVSYDFPQDSHFDPHFRSHRRPSGCLIQDMPDGHSKITWVEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLATLQRTCERLTYLMDSTGDNPGGVISSAEGKRSMMRLAERMVTNFCGSIGTSSGRRWTTISGLNEILIRVTVHKSSNPGQPNGVVLSAATTIWLPTPPHTVFNFFKDETKRPQWDVLSNGNAVQEVAQIANGPNPGNSISVLRAFNTSQNMLILQESCIDSSGSLVVYCPVDLPSINIAMSGEDTSCIPLLPNGFTILPDGETEQEGDGASTSSNANRNKARCGGSLVTVAFQILVSSSPSAKLNMEVTTVCNLIGSTVQQIKASFSCPT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00012 712 ProSiteProfiles START domain profile. 220 454 IPR002913 GO:0008289
Viun3g00012 712 Gene3D - 11 95 - -
Viun3g00012 712 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Viun3g00012 712 Gene3D - 228 450 IPR023393 -
Viun3g00012 712 CDD homeodomain 24 83 IPR001356 GO:0003677
Viun3g00012 712 SUPERFAMILY Bet v1-like 471 692 - -
Viun3g00012 712 SUPERFAMILY Bet v1-like 221 452 - -
Viun3g00012 712 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Viun3g00012 712 FunFam Homeobox-leucine zipper protein HDG1 12 98 - -
Viun3g00012 712 SUPERFAMILY Homeodomain-like 8 82 IPR009057 -
Viun3g00012 712 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Viun3g00012 712 MobiDBLite consensus disorder prediction 1 33 - -
Viun3g00012 712 CDD START_ArGLABRA2_like 224 450 - -
Viun3g00012 712 SMART START_1 229 451 IPR002913 GO:0008289
Viun3g00012 712 FunFam Homeobox-leucine zipper protein GLABRA 2 229 450 - -
Viun3g00012 712 Pfam START domain 230 451 IPR002913 GO:0008289
Viun3g00012 712 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 708 IPR042160 -
Viun3g00012 712 SMART HOX_1 23 86 IPR001356 GO:0003677
Viun3g00012 712 MobiDBLite consensus disorder prediction 641 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00012 Viun-Chr3 48896 52552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00012 20 712 Homeobox Transcription Factor Family AT1G73360 62.465 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun3g00012 START 4.6e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00012 K09338 - gmx:100796042 1219.53