Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00009 ATGAGGTGGTGCAGAGAGGTGTTCTCTGTGAGTGGGTCTGGGTTGGGTGCTCATGCCATTGCGCTCTCACTAGCACCTATAGTTACTGCTTCCTTTTGCAGCAAAAGTCTTGTGTTGCCATTCCAAAATTCTCCCTTCAAATTGAAATTCACTGACTCGTCTTCTCTTGCCCTCACCCATCGTAAGCAGCTCCTACCCGCCGCACTGCCACTAACACAGCCCTCTACTTCAAGGGAGGATGATTTTGATTTTTTGGTTGTCAATTTCTACCATTTTGTGTTCATCCAAGACCCACAAGCCGAAGTCGCCAAACACCGTTCTTTCTTAGAATTTCAGGACCTCGACATCAACGGAAGAGTCTATCTGAATGAACAAGGGATTAATGCCCAGTATAGTGGACCATCAAAAGATGCTCTGGCATATGTCAACTGGTTAAGAGAGGATAACAGGTTTTCTGACATATTGGTTCAGATATCTCCATCAGAAAATGGACATACCTTTCCAGCATTAAAGTTGCGTTATAAGCCTTCATTGGTACAGTTTGAAGGTGGTATGTCACATCTTCCGTTGCTTGATCCTTCAATGCGTGCAATACCTTTATCACCATCAGAATGGAAAGAAAGATTGGAAGCAGTCAATAAAACTGATCTTAACAGAGATTTCGTTTTATTGGATGTCAGAAATGGTTATGAGTGGGATGTTGGACATTTTCGTGGGGCTCAACGACCTAGTGTGGACTGCTTTAGGAACACTTCATTTGGTCTTTCTCAGGAAGAGATCACTGCTTCAGATCCTTTATCAAAAGTGGATAAAGAAAAGGCAAACATATTGATGTATTGCACAGGAGGGATTCGATGTGATGTATATTCTACAATACTAAGGAGGCAGGGATTTCAGAATCTATATACCCTGAAGGGAGGTGTTTCTCACTATTTAAAGAACGAAGGTGCTGCTGAATGGGTGGGAAATTTATTTGTATTTGACTCCCGTTTGTCTCTCCCTCCTTCTGTTTACCATACTGGGGCCACAACCGAAGCAGAATTAACTCCAGTTTCTGGAGATGATAAGTTTGCAAATTGCCATGTATGTAATTTGGAAGTCAGTGAATTGAGACATAGGAACTGCGCAAATCTTGATTGTAATTTACTTTTTCTATGCTGCACAAAATGTGTAAAGGATCTAAGAGGTTGTTGCTGTTTAACGTGCACTGCTGCTCCTCGGCTTAGACCTGTTTTAAATGGAATGCAGAGATACAAAAAATGGCACAACTATCGGGATATGGATTTGCCAGAGCAAGGACTAATTCAACTTAAATGCAGCAATGACTAA 1329 0.4176 MRWCREVFSVSGSGLGAHAIALSLAPIVTASFCSKSLVLPFQNSPFKLKFTDSSSLALTHRKQLLPAALPLTQPSTSREDDFDFLVVNFYHFVFIQDPQAEVAKHRSFLEFQDLDINGRVYLNEQGINAQYSGPSKDALAYVNWLREDNRFSDILVQISPSENGHTFPALKLRYKPSLVQFEGGMSHLPLLDPSMRAIPLSPSEWKERLEAVNKTDLNRDFVLLDVRNGYEWDVGHFRGAQRPSVDCFRNTSFGLSQEEITASDPLSKVDKEKANILMYCTGGIRCDVYSTILRRQGFQNLYTLKGGVSHYLKNEGAAEWVGNLFVFDSRLSLPPSVYHTGATTEAELTPVSGDDKFANCHVCNLEVSELRHRNCANLDCNLLFLCCTKCVKDLRGCCCLTCTAAPRLRPVLNGMQRYKKWHNYRDMDLPEQGLIQLKCSND 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00009 442 Gene3D - 193 347 IPR036873 -
Viun3g00009 442 Pfam Rhodanese-like domain 216 312 IPR001763 -
Viun3g00009 442 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 199 333 IPR036873 -
Viun3g00009 442 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 77 420 IPR020936 -
Viun3g00009 442 SMART rhod_4 201 317 IPR001763 -
Viun3g00009 442 Gene3D - 73 179 - -
Viun3g00009 442 Pfam Rhodanase C-terminal 322 403 IPR022111 -
Viun3g00009 442 Pfam UPF0176 acylphosphatase like domain 86 176 IPR040503 -
Viun3g00009 442 CDD RHOD_YceA 200 313 - -
Viun3g00009 442 ProSiteProfiles Rhodanese domain profile. 217 320 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00009 Viun-Chr3 37250 43795 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00009 83 428 Sulfurtransferasese or Rhodanese AT1G17850 67.956 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00009 - - gmx:100814358 748.814