Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00007 ATGAACGGGAAAGCCTCCATCTCTAAGGAGCTCAATGCCAAACACGCCAAGATCTTGGAAGAACTTCTTAAGCTGCCCGAGAACAGGGAATGTGCAGACTGCCGGAACAGGGCACCACGATGGGCTAGTGTTAACCTAGGGATTTTCATTTGCATGCAATGTTCGGGAATTCACCGAAGCCTCGGAGTTCATATATCAAAGGTGCGGTCCACAACTTTAGATACGTGGTTGCCAGACCAAGTTTCTTTCATGCAATGTATGGGTAATGTAAAGTCAAATAAGCACTGGGAAGCAGAAATGCCACTAAATTTTGATAGAAGTAAATTGGCAATGGAGAAGTTTATCCGTATGAAGTATGTGGAGAAAAAATGGGCTTCAAAAGATGAAGTGCACTCAACATCAAATGGAGGCATTCCGAAGAACAACAGGAGACTCTCTCTTGAAGAAAGCATTCTTGCAAACCACGTCGCACAAATTCTACCACCAATAACAAGACCTCGAGGGGATTTTATAGACACGCAAAAGAAGAACTCTCCTCCATTTAAAAGACCATCCTCGTCTGTTGATTTTGACAAGTCCACCAAGAGCATCGCTACTGGGGACATTTTCAACTTGCTTTGCATCTATGACGATAACCAAAATTTCTCAACAGTGCCACCTTCAACTTGGGCAACATTTGATTGTATGATAAATCATTATGTCTCTATATGA 711 0.4248 MNGKASISKELNAKHAKILEELLKLPENRECADCRNRAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQCMGNVKSNKHWEAEMPLNFDRSKLAMEKFIRMKYVEKKWASKDEVHSTSNGGIPKNNRRLSLEESILANHVAQILPPITRPRGDFIDTQKKNSPPFKRPSSSVDFDKSTKSIATGDIFNLLCIYDDNQNFSTVPPSTWATFDCMINHYVSI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00007 236 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Viun3g00007 236 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Viun3g00007 236 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Viun3g00007 236 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 189 IPR044520 GO:0005096
Viun3g00007 236 FunFam stromal membrane-associated protein 1 isoform X1 1 130 - -
Viun3g00007 236 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Viun3g00007 236 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Viun3g00007 236 CDD ArfGap 19 119 - -
Viun3g00007 236 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Viun3g00007 236 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Viun3g00007 236 SUPERFAMILY ArfGap/RecO-like zinc finger 16 126 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00007 Viun-Chr3 33801 36963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00007 19 124 C2H2 Transcription Factor Family AT3G07940 46.957 2.29e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00007 K12486 - gmx:100803735 395.201