Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00004 ATGAACGGGAAAGCCTCCATCTCTAAGGAGCTCAATGCCAAACACGCCAAGATCTTGGAAGAACTTCTTAAGCTGCCCGAGAACAGGGAATGTGCAGACTGCCGGAACAGGGCACCACGATGGGCTAGTGTTAACCTAGGGATTTTCATTTGCATGCAATGTTCGGGAATTCACCGAAGCCTCGGAGTTCATATATCAAAGGTGCGGTCCACAACTTTAGATACGTGGTTGCCAGACCAAGTTTCTTTCATGCAATGTATGGGTAATGTAAAGTCAAATAAGCACTGGGAAGCAGAAATGCCACTAAATTTTGATAGAAGTAAATTGGCAATGGAGAAGTTTATCCGTATGAAGTATGTGGAGAAAAAATGGGCTTCAAAAGATGAAGTGCACTCAACATCAAATGGAGGCATTCCGAAGAACAACAGGAGACTCTCTCTTGAAGAAAGCATTCTTGCAAACCACGTCGCACAAATTCTACCACCAATAACAAGACCTCGAGGGACACGCAAAAGAAGAACTCTCCTCCATTTAAAAGACCATCCTCGTCTGTTGATTTTGACAAGTCCACCAAGAGCATCGCTACTGGGGACATTTTCAACTTGCTTTGCATCTATGACGATAACCAAAATTTCTCAACAGTGCCACCTTCAACTTGGGCAACATTTGATTATGTCACAACATTATAGTTTCTTTTGA 699 0.4292 MNGKASISKELNAKHAKILEELLKLPENRECADCRNRAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQCMGNVKSNKHWEAEMPLNFDRSKLAMEKFIRMKYVEKKWASKDEVHSTSNGGIPKNNRRLSLEESILANHVAQILPPITRPRGTRKRRTLLHLKDHPRLLILTSPPRASLLGTFSTCFASMTITKISQQCHLQLGQHLIMSQHYSFF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00004 232 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Viun3g00004 232 SUPERFAMILY ArfGap/RecO-like zinc finger 16 126 IPR037278 -
Viun3g00004 232 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Viun3g00004 232 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Viun3g00004 232 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Viun3g00004 232 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Viun3g00004 232 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Viun3g00004 232 CDD ArfGap 19 119 - -
Viun3g00004 232 FunFam stromal membrane-associated protein 1 isoform X1 1 130 - -
Viun3g00004 232 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Viun3g00004 232 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 135 IPR044520 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00004 Viun-Chr3 32961 36967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00004 19 124 C2H2 Transcription Factor Family AT3G07940 46.957 9.62e-27 102