Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02978 ATGGAGGAAGATGAAATGGTTTGGTGTTCGTCTGATTCTTGTTCATCTGATTCGGGAGACGAAGATATCGAAGAACGGAAATCGCAGAACGTGGATGCGCTAGTCAGGGGCAACCTTGTCGTGAAGAGACAGTCGCTGCTACCGCGGCTTCTTTCAGTATCGCAAGGGGCTGCCGTTTGTAGAAAACCCTTTAAACCTCCATCTTCCAAATCCCATGCTTCCACTTACAATCAAGACCTCACTCGCAGGCTTTCCGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCCTCTCCTATTCCTAGACCTGCTTTCTCCGACTTCCAATTCAACGCACCAGTAACTGAGTCCCTTCTTGATGTTCATGTTCCTGTTTCTGAGGAGCCCAAACCATCTCTGCCCCCGGGGATCGATCCTTTAGTACTATGGCACTCTCAAGACTCCCACATTGACCCCTCTAATACTAATTTTACCACCATTACAGTTGACCCTTTGCTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGATTGTGTCTCTGGTCTGTGTACCACACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTCTGGGGAAGACATTGCAGTCCATCACCTTACTATATACTCTACTTTGTCAAGGGTTTGATGGCAAGCCATTGGTTCGAAAATCCATCATAGTGACTCCTACCAGCCTCGTCAGTAATTGGGAAGCTGAAATAAAAAAGTGGGTTGGTGAAAGGGTTCGTCTTGTTGCTCTATGTGAGAGTGCAAGAGAAGATGTCATCTCTGCGATTGACTGTTTTACAAGTCCCGAAAGAAATTTACAGGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTGTTCAAAGTTTAGCTCTAGTGACTCATGTGACCTTCTCATATGTGATGAGGCTCACAGATTGAAAAATGATCAAACAATAACAAACCGGGCATTGGCAGCTCTTCCCTGCAAACGAAGAATTTTATTGTCAGGAACTCCCTTACAAAATGATTTAGAAGAATTCTTTGCAATGGTTAACTTCACAAATCCTGGAATATTGGGCAGTATTGCACATTTTCGTCGTTACTATGAGGCACCAATTATCTGTGGAAGAGAACCTGCTGCCACTGTTGAAGAGAAGAAGATAGGTGCTGAACGCTCTGCTGAATTAAGTGTCAATGTTAATAGGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTGCCACCTAAGATAGTTGAAGTTGTTTGCTGCAAATTGACTCCACTACAGTCAGACCTATATAAACATTTTATACAATCGAAAAATGTGAAGAGGGCAATTACTGAAGAACTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTCAAAAAATTGTGCAATCATCCAAAGCTTATCTATGATACCATAAAAAGTGGGAGCCCAGGAACTTCGGGTTTTGAGGAGTGTATCCGATTCTTCCCGCCTGAAATGTTATCTGGAAGGTCTGGCTCGTGGACTGGAGGGCATGGAGCATGGGTTGAACTATCCGGGAAAATGCATGTCTTGGCAAGATTACTTGCTCATTTACGTCACAGAACTAATGACCGCATTGTCCTTGTCTCAAACTACACTCAGACTCTCGATCTTTTTGGTCAATTGTGTCGCGAACGAAGGTACCCTCATTTGAGGCTTGATGGCTCCACGTCAATTAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGATCTATCAAAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATCGGTGGAAATCGACTTGTCTTGTTCGATCCTGATTGGAACCCAGCAAATGATAAACAAGCTGCAGCAAGAGTATGGAGGGATGGACAGAAGAAAAGAGTTTATATTTATAGATTTTTGAGTGCTGGAACTATAGAAGAAAAGGTTTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACTGATAGTTTTGTGTCACAGGGTAACTTTCTTTCAACAGAGGATCTTCGTGATTTGTTTACTTTTCATGAAAACATTAAGTCAGAGATTCATGAAAAGATGCAATGCAGTCGATGTGAAACACATGGTGGTCCTCAAAGCACTGATGCCCAATCAACAGCAGATAATGAATCTGGAGAAGAAACCTCCGATATAGGTGGATTTGCAGAAATTGCTGGCTGCTTACAGAATTTAAAAAGATCAGAAATGCAGGTAGGGAGCCCATTGGAAGAAGATTTAGGAAGTTGGGGCCATCATTTTTTACCAAATTCTGTACCAGATGCCATCCTTCAGGCTTCGGCCGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTTAACGGACTACTGGTACCCATCGAGTCTATGAGTCCCAAGCTACAGAAAAAGGAACCAAATAAGGAATTACTCAAATCATTGCCCACTCCTTTTTCTTTGCAGAACAGATTACCGCTGCAGTCTGCTTCTGGTGTTGCTGGTATGTCAAATTCTGTGGGGATTAGCAAAAACATCTCAAATTACTCTCTTGTTAGTAAATTATTACCACACAAAAGATCACATCCTGCTAATATCAGGCATCATAATTTTGAGTAA 2661 0.4235 MEEDEMVWCSSDSCSSDSGDEDIEERKSQNVDALVRGNLVVKRQSLLPRLLSVSQGAAVCRKPFKPPSSKSHASTYNQDLTRRLSARKRFVPWGSSSPIPRPAFSDFQFNAPVTESLLDVHVPVSEEPKPSLPPGIDPLVLWHSQDSHIDPSNTNFTTITVDPLLVRYLRPHQREGVQFMFDCVSGLCTTPNIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPLVRKSIIVTPTSLVSNWEAEIKKWVGERVRLVALCESAREDVISAIDCFTSPERNLQVLIVSYETFRMHCSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGSIAHFRRYYEAPIICGREPAATVEEKKIGAERSAELSVNVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIKSGSPGTSGFEECIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRHRTNDRIVLVSNYTQTLDLFGQLCRERRYPHLRLDGSTSISKRQKLVNCFNDLSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSFVSQGNFLSTEDLRDLFTFHENIKSEIHEKMQCSRCETHGGPQSTDAQSTADNESGEETSDIGGFAEIAGCLQNLKRSEMQVGSPLEEDLGSWGHHFLPNSVPDAILQASAGDEVTFVFTNQVNGLLVPIESMSPKLQKKEPNKELLKSLPTPFSLQNRLPLQSASGVAGMSNSVGISKNISNYSLVSKLLPHKRSHPANIRHHNFE 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02978 886 FunFam DNA repair and recombination protein RAD54-like 515 685 - -
Viun2g02978 886 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 360 IPR014001 -
Viun2g02978 886 Gene3D - 432 701 - -
Viun2g02978 886 FunFam DNA repair and recombination protein RAD54 138 409 - -
Viun2g02978 886 PANTHER SNF2/RAD54 FAMILY MEMBER 52 798 - -
Viun2g02978 886 Pfam Helicase conserved C-terminal domain 529 637 IPR001650 -
Viun2g02978 886 MobiDBLite consensus disorder prediction 716 736 - -
Viun2g02978 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 410 IPR027417 -
Viun2g02978 886 SMART helicmild6 554 638 IPR001650 -
Viun2g02978 886 SMART ultradead3 165 368 IPR014001 -
Viun2g02978 886 Gene3D - 410 718 IPR027417 -
Viun2g02978 886 Pfam SNF2-related domain 172 478 IPR000330 GO:0005524|GO:0140658
Viun2g02978 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 715 IPR027417 -
Viun2g02978 886 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 527 688 IPR001650 -
Viun2g02978 886 FunFam Predicted protein 432 506 - -
Viun2g02978 886 Gene3D - 140 409 IPR038718 -
Viun2g02978 886 MobiDBLite consensus disorder prediction 713 740 - -
Viun2g02978 886 CDD SF2_C_SNF 521 649 - -
Viun2g02978 886 MobiDBLite consensus disorder prediction 1 25 - -
Viun2g02978 886 CDD DEXHc_RAD54 169 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02978 Viun-Chr2 33774444 33784971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02978 195 658 RAD5 or RAD16-like Gene Family AT3G16600 24.860 2.67e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun2g02978 SNF2_N 1.8e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02978 K10875 - gmx:100781631 1498.03