Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02945 ATGGAGCATATTGAGGAGATGTCTCAAGAATGGATGAGTTGTCTCAGTGAAGTGTACACAGAGGAGGAAGCTGACTTCATGAACCAGCTGCTTGGTAACTGCTCAATCCCAGAACAGTTTTATGAAAGTTTGAACATGGAAACAAAAGCTCCAAATGCAGATTCACAATCCCAGAACAGTGCTCATAGTACCATTGGTTTTTCCTTACAAGAGTTGGGTCTTGAGTCAGGGAGAGAGAATCTTGCTGACATGGATTTGCAGGATCACAATGTACGCCAAATACTAGTTTCTGAACCAGAAAAGGATAATAGCAGAAGCATGGAGAAATCAGAAAAAAGGTTTAGGAGCTCATTTGAGGGCCCAGAGAACAAGAGGAATGTGAAATCTAAGAAGAATCCAAAACCAGCTTCTTTAAGGAACACTGAAGAGGAAGCAAGTCCTGACCCTCAGAATCAGACCTTAAACAGTTGCTGTTCAGATGATGACTCCAAAGATTCTAGAGCGCCAAAGTTAAGTGGAAAATCAATATCTAATAGAGACCCTGCAACTGATACACAGAGCGCGTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGACTGAGAATTCTACAGAGTCTGGTCCCGAATGGAACTAAGGTGGATATCAGCACAATGCTTGATGAAGCTGTGCAATATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTGAGTTCTGATGATCTGTGGATGTACGCTCCCATTGCTTTCAATGGAATGAACATTGGCCTCGAACTTAACATCAACATCACAAAACAACAAAAAAAATGCATATCATAG 819 0.4054 MEHIEEMSQEWMSCLSEVYTEEEADFMNQLLGNCSIPEQFYESLNMETKAPNADSQSQNSAHSTIGFSLQELGLESGRENLADMDLQDHNVRQILVSEPEKDNSRSMEKSEKRFRSSFEGPENKRNVKSKKNPKPASLRNTEEEASPDPQNQTLNSCCSDDDSKDSRAPKLSGKSISNRDPATDTQSAYARKRRERINERLRILQSLVPNGTKVDISTMLDEAVQYVKFLQLQIKLLSSDDLWMYAPIAFNGMNIGLELNINITKQQKKCIS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02945 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 247 IPR036638 GO:0046983
Viun2g02945 272 CDD bHLH_AtIND_like 182 244 - -
Viun2g02945 272 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 42 246 IPR045843 GO:0003700|GO:0006355
Viun2g02945 272 Gene3D - 179 239 IPR036638 GO:0046983
Viun2g02945 272 MobiDBLite consensus disorder prediction 170 185 - -
Viun2g02945 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 230 IPR011598 GO:0046983
Viun2g02945 272 MobiDBLite consensus disorder prediction 94 190 - -
Viun2g02945 272 SMART finulus 187 236 IPR011598 GO:0046983
Viun2g02945 272 FunFam Basic helix-loop-helix transcription factor 182 239 - -
Viun2g02945 272 MobiDBLite consensus disorder prediction 143 159 - -
Viun2g02945 272 Pfam Helix-loop-helix DNA-binding domain 191 231 IPR011598 GO:0046983
Viun2g02945 272 MobiDBLite consensus disorder prediction 94 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02945 Viun-Chr2 33653172 33656183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02945 6 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 39.017 1.45e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun2g02945 HLH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02945 - - var:108319891 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02945 2 33653172 33656183 Viun2g02945 2 33653172 33656183 ECH
Viun2g02945 2 33653172 33656183 Viun7g03587 7 37137197 37138855 PCT