LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun2g02906	ATGACCATGGTCAAACATAGACCTTCTTCATCTGTGCTTTTGTTCTTGTTCATCGTATTTATATTTATGTCGTCTCTCAATCGCGTTTCTGGAGAAGACCCTATTGATATTTACTGTCCCACTGAATTCCCACTGTACAACCTCAATAGTTCATTCCACGACAACCTCAACCTTGTTCTGGGGTTGCTTTCCTCCGACAACGCTTCAAAGGCTGGTTTCTATAACACTTCTATAGGAGAAGAGCCAAACAAAGTGTACGGACAATCACTGTGCAGAGGGGACATCAGCAACTCCACTGTTTGCAAAGAATGCATTGAGAAAGCAAGCCAAGATATAATGAATAGTTGCAGGAGTGAAAATGCAATGATATGGTATAACCTTTGCCAAGTACGCTACTCCTTCCAGAGCTTTGATGTGGTGGCTTACACCGGAAAGTATCCGAAGCAGAATGATGAGGAGAAGAATGTCTCTGATCCTATTCGGTTCAGGGAATACTTGAGTTTTCTAATGAACAATCTCTCAACCGAGGCTGCTTCTGTGAAGAACATGTTTGCGGCTGGTGAAATTGACTATCCTGGGAAGAAGACAATTTATGGGTTGGTCCAATGTACGAGGGACATGTCCCTCGAAAACTGTGGCAGTTGTTTGAGTTCCGCCTTCACGGAAATCACTGCATGCTGCTCCTACAGAGAAGGTGGGATTATTCTTAGTCGTACTTGCAATATGAGGTTCCAAATGTCTCAGTTCTTCAATGCTTCTTCTGCATATCTGTTGGTTTACCCAACTTCCACAGGAGGGAAATGGAAGTCCTGGATGTTTGTGCTGATTATATGTGGGTCGATTTTTGTATTGGCACTTGTTGTTGGGTTGGGCATTGCATGCTTACGAGGAAAGAACAATAGAGACAGAGATAAAGAAATGAGTGAACGAACGCTATTACAAGAGTTGACCACCCCTAAGCATGTGGCTGTCACAGAAGAAGGTGACTTGATTAGTTCGGATGAAATGTTGTTCATGACTTTAGCTTCCATCAGGGTTGCTACTGATGAGTTTTCTGATACAAATAAGCTGGGACAAGGAGGGTTTGGTGCAGTGTACAAGGGTGTTCTGCCAGATGGTAATGAAGTAGCAGTTAAAAGATTGTCGAGAAAATCTTGGCAAGGCATAGAGGAATTTAAAAATGAAGTTGTGTTGATTGCCAAACTTCAACACAAGAATTTGGTGAGGCTGTTAGGTTGTGCCTTGGAGGGAGAAGAAAAGTTACTCATATATGAATTCATGTCAAACAAAAGCCTTGATCAACTTATCTTTGATCCAGAAAAACGTTCAAAACTTGATTGGAAGACATACAATGGTATTATCAATGGCATAGCGAGAGGACTACTTTATCTCCACGAGGAGTCTCGCCTTAAAATCATTCACAGAGACTTAAAACCCAACAATGTGTTGTTAGACTACGATCTGTCGGCTAAAATATCAGATTTTGGTATGGCCAGGATATTTTCTGAGAATCAGAATGCAGCAAACACCAAAAGAGTCGTGGGAACATATGGATATATGGCTCCAGAGTATGCAATGGAAGGATTGTTCAGTGTGAAATCCGATGTCTTCAGCTTTGGCGTTATCTTGCTTGAAATCATCAGCGGAAAAAGAAACAGTGGTTTTTACCAAACCGAACTTGCCCCGACACTGCTGGCATATGCATGGCGAGTGTGGAATGAAGGAAAAGCATTGGACTTTGTGGATCCAGTGTTGTTGGAATCATGCCCTGCATCTGAAGTTGTAAGATGCATGCACATTGGGCTTCTGTGCGTGCAGGAAAATCCGGAACACAGGCCCACCATGTCTACTGTGATGCTTCTCCAGGGAAGTGAATCGGTGGTTCTTCCCCAACCAAAACAACCTGCTTTTTCTTTGAGTAGGGTTCTTCGTCTCGATCCATCTACAAAAACCAATCCTTCAGAAAAGGAGATTATATTCTCTGATATTTTACCTCGATGA	2001	0.4243	MTMVKHRPSSSVLLFLFIVFIFMSSLNRVSGEDPIDIYCPTEFPLYNLNSSFHDNLNLVLGLLSSDNASKAGFYNTSIGEEPNKVYGQSLCRGDISNSTVCKECIEKASQDIMNSCRSENAMIWYNLCQVRYSFQSFDVVAYTGKYPKQNDEEKNVSDPIRFREYLSFLMNNLSTEAASVKNMFAAGEIDYPGKKTIYGLVQCTRDMSLENCGSCLSSAFTEITACCSYREGGIILSRTCNMRFQMSQFFNASSAYLLVYPTSTGGKWKSWMFVLIICGSIFVLALVVGLGIACLRGKNNRDRDKEMSERTLLQELTTPKHVAVTEEGDLISSDEMLFMTLASIRVATDEFSDTNKLGQGGFGAVYKGVLPDGNEVAVKRLSRKSWQGIEEFKNEVVLIAKLQHKNLVRLLGCALEGEEKLLIYEFMSNKSLDQLIFDPEKRSKLDWKTYNGIINGIARGLLYLHEESRLKIIHRDLKPNNVLLDYDLSAKISDFGMARIFSENQNAANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVILLEIISGKRNSGFYQTELAPTLLAYAWRVWNEGKALDFVDPVLLESCPASEVVRCMHIGLLCVQENPEHRPTMSTVMLLQGSESVVLPQPKQPAFSLSRVLRLDPSTKTNPSEKEIIFSDILPR	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun2g02906	666	CDD	STKc_IRAK	357	618	-	-
	Viun2g02906	666	ProSiteProfiles	Protein kinase domain profile.	351	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g02906	666	Gene3D	Phosphorylase Kinase; domain 1	326	426	-	-
	Viun2g02906	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	472	484	IPR008271	GO:0004672\|GO:0006468
	Viun2g02906	666	Gene3D	Transferase(Phosphotransferase) domain 1	427	627	-	-
	Viun2g02906	666	SUPERFAMILY	Protein kinase-like (PK-like)	336	631	IPR011009	-
	Viun2g02906	666	FunFam	Cysteine-rich receptor-like protein kinase 10	314	426	-	-
	Viun2g02906	666	FunFam	Cysteine-rich receptor-like protein kinase 10	147	249	-	-
	Viun2g02906	666	Pfam	Salt stress response/antifungal	154	245	IPR002902	-
	Viun2g02906	666	Pfam	Salt stress response/antifungal	46	134	IPR002902	-
	Viun2g02906	666	ProSiteProfiles	Gnk2-homologous domain profile.	33	137	IPR002902	-
	Viun2g02906	666	ProSitePatterns	Protein kinases ATP-binding region signature.	357	379	IPR017441	GO:0005524
	Viun2g02906	666	ProSiteProfiles	Gnk2-homologous domain profile.	144	249	IPR002902	-
	Viun2g02906	666	SMART	serkin_6	351	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g02906	666	FunFam	Uncharacterized protein	427	628	-	-
	Viun2g02906	666	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	47	644	-	-
	Viun2g02906	666	Pfam	Protein tyrosine and serine/threonine kinase	354	619	IPR001245	GO:0004672\|GO:0006468
	Viun2g02906	666	Gene3D	-	37	137	IPR038408	-
	Viun2g02906	666	Gene3D	-	145	249	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun2g02906	Viun-Chr2	33394967	33398316	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun2g02906	39	637	Receptor kinase-like Gene Family	AT4G23230	44.677	8.67e-178	518

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun2g02906		PK_Tyr_Ser-Thr	1.2e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun2g02906	-		-	gmx:102669229	1099.73