LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun2g02905	ATGACCATGGTCAAACATAGACCTTCTTCATCTGTGCTTTTGTTCTTGTTCATCGTATTTATATTTATGTCGTCTCTCAATCGCGTTTCTGGAGAAGACCCTATTGATATTTACTGTCCCACTGAATTCCCACTGTACAACCTCAATAGTTCATTCCACGACAACCTCAACCTTGTTCTGGGGTTGCTTTCCTCCGACAACGCTTCAAAGGCTGGTTTCTATAACACTTCTATAGGAGAAGAGCCAAACAAAGTGTACGGACAATCACTGTGCAGAGGGGACATCAGCAACTCCACTGTTTGCAAAGAATGCATTGAGAAAGCAAGCCAAGATATAATGAATAGTTGCAGGAGTGAAAATGCAATGATATGGTATAACCTTTGCCAAGTACGCTACTCCTTCCAGAGCTTTGATGTGGTGGCTTACACCGGAAAGTATCCGAAGCAGAATGATGAGGAGAAGAATGTCTCTGATCCTATTCGGTTCAGGGAATACTTGAGTTTTCTAATGAACAATCTCTCAACCGAGGCTGCTTCTGTGAAGAACATGTTTGCGGCTGGTGAAATTGACTATCCTGGGAAGAAGACAATTTATGGGTTGGTCCAATGTACGAGGGACATGTCCCTCGAAAACTGTGGCAGTTGTTTGAGTTCCGCCTTCACGGAAATCACTGCATGCTGCTCCTACAGAGAAGGTGGGATTATTCTTAGTCGTACTTGCAATATGAGGTTCCAAATGTCTCAGTTCTTCAATGCTTCTTCTGCATATCTGTTGGTTTACCCAACTTCCACAGGAGGGAAATGGAAGTCCTGGATGTTTGTGCTGATTATATGTGGGTCGATTTTTGTATTGGCACTTGTTGTTGGGTTGGGCATTGCATGCTTACGAGGAAAGAACAATAGAGACAGAGATAAAGAAATGAGTGAACGAACGCTATTACAAGAGTTGACCACCCCTAAGCATGTGGCTGTCACAGAAGAAGGTGACTTGATTAGTTCGGATGAAATGTTGTTCATGACTTTAGCTTCCATCAGGGTTGCTACTGATGAGTTTTCTGATACAAATAAGCTGGGACAAGGAGGGTTTGGTGCAGTGTACAAGGGTGTTCTGCCAGATGGTAATGAAGTAGCAGTTAAAAGATTGTCGAGAAAATCTTGGCAAGGCATAGAGGAATTTAAAAATGAAGTTGTGTTGATTGCCAAACTTCAACACAAGAATTTGGTGAGGCTGTTAGGTTGTGCCTTGGAGGGAGAAGAAAAGTTACTCATATATGAATTCATGTCAAACAAAAGCCTTGATCAACTTATCTTTGAAAAACGTTCAAAACTTGATTGGAAGACATACAATGGTATTATCAATGGCATAGCGAGAGGACTACTTTATCTCCACGAGGAGTCTCGCCTTAAAATCATTCACAGAGACTTAAAACCCAACAATGTGTTGTTAGACTACGATCTGTCGGCTAAAATATCAGATTTTGGTATGGCCAGGATATTTTCTGAGAATCAGAATGCAGCAAACACCAAAAGAGTCGTGGGAACATATGGATATATGGCTCCAGAGTATGCAATGGAAGGATTGTTCAGTGTGAAATCCGATGTCTTCAGCTTTGGCGTTATCTTGCTTGAAATCATCAGCGGAAAAAGAAACAGTGGTTTTTACCAAACCGAACTTGCCCCGACACTGCTGGCATATGCATGGCGAGTGTGGAATGAAGGAAAAGCATTGGACTTTGTGGATCCAGTGTTGTTGGAATCATGCCCTGCATCTGAAGTTGTAAGATGCATGCACATTGGGCTTCTGTGCGTGCAGGAAAATCCGGAACACAGGCCCACCATGTCTACTGTGATGCTTCTCCAGGGAAGTGAATCGGTGGTTCTTCCCCAACCAAAACAACCTGCTTTTTCTTTGAGTAGGGTTCTTCGTCTCGATCCATCTACAAAAACCAATCCTTCAGAAAAGGAGATTATATTCTCTGATATTTTACCTCGATGA	1995	0.4241	MTMVKHRPSSSVLLFLFIVFIFMSSLNRVSGEDPIDIYCPTEFPLYNLNSSFHDNLNLVLGLLSSDNASKAGFYNTSIGEEPNKVYGQSLCRGDISNSTVCKECIEKASQDIMNSCRSENAMIWYNLCQVRYSFQSFDVVAYTGKYPKQNDEEKNVSDPIRFREYLSFLMNNLSTEAASVKNMFAAGEIDYPGKKTIYGLVQCTRDMSLENCGSCLSSAFTEITACCSYREGGIILSRTCNMRFQMSQFFNASSAYLLVYPTSTGGKWKSWMFVLIICGSIFVLALVVGLGIACLRGKNNRDRDKEMSERTLLQELTTPKHVAVTEEGDLISSDEMLFMTLASIRVATDEFSDTNKLGQGGFGAVYKGVLPDGNEVAVKRLSRKSWQGIEEFKNEVVLIAKLQHKNLVRLLGCALEGEEKLLIYEFMSNKSLDQLIFEKRSKLDWKTYNGIINGIARGLLYLHEESRLKIIHRDLKPNNVLLDYDLSAKISDFGMARIFSENQNAANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVILLEIISGKRNSGFYQTELAPTLLAYAWRVWNEGKALDFVDPVLLESCPASEVVRCMHIGLLCVQENPEHRPTMSTVMLLQGSESVVLPQPKQPAFSLSRVLRLDPSTKTNPSEKEIIFSDILPR	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun2g02905	664	Pfam	Protein tyrosine and serine/threonine kinase	354	617	IPR001245	GO:0004672\|GO:0006468
	Viun2g02905	664	Gene3D	Phosphorylase Kinase; domain 1	326	426	-	-
	Viun2g02905	664	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	47	642	-	-
	Viun2g02905	664	ProSiteProfiles	Protein kinase domain profile.	351	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g02905	664	SUPERFAMILY	Protein kinase-like (PK-like)	332	617	IPR011009	-
	Viun2g02905	664	SMART	serkin_6	351	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g02905	664	FunFam	Cysteine-rich receptor-like protein kinase 10	314	426	-	-
	Viun2g02905	664	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	470	482	IPR008271	GO:0004672\|GO:0006468
	Viun2g02905	664	FunFam	Cysteine-rich receptor-like protein kinase 10	147	249	-	-
	Viun2g02905	664	Gene3D	Transferase(Phosphotransferase) domain 1	427	625	-	-
	Viun2g02905	664	Pfam	Salt stress response/antifungal	154	245	IPR002902	-
	Viun2g02905	664	Pfam	Salt stress response/antifungal	46	134	IPR002902	-
	Viun2g02905	664	ProSiteProfiles	Gnk2-homologous domain profile.	33	137	IPR002902	-
	Viun2g02905	664	ProSitePatterns	Protein kinases ATP-binding region signature.	357	379	IPR017441	GO:0005524
	Viun2g02905	664	ProSiteProfiles	Gnk2-homologous domain profile.	144	249	IPR002902	-
	Viun2g02905	664	FunFam	Uncharacterized protein	427	626	-	-
	Viun2g02905	664	CDD	STKc_IRAK	357	616	-	-
	Viun2g02905	664	Gene3D	-	145	249	IPR038408	-
	Viun2g02905	664	Gene3D	-	37	137	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun2g02905	Viun-Chr2	33394962	33398316	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun2g02905	39	635	Receptor kinase-like Gene Family	AT4G23230	44.355	3.33e-174	509

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun2g02905		PK_Tyr_Ser-Thr	9.9e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun2g02905	-		-	gmx:102669229	1089.72