LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun2g02904	ATGCATTCCAAACTCATTCAATTGCTGCTTCTCTGCACTTTTTCTTTGTTTTCTGATGTTGTATTTGGCGATCCTCCGTATACAATTTGTTCTTCAAGCGGCAGCTATGTAAATGGCAGTTCCTTTGAAAACAATTTAAACAACCTTCTTTCATCTCTATCCTCCAATGCTTCAGACTCTAAATTCTATAATACTTCTTATGGGATTGCCCCTGACACAGTTTATGGCCTCTACATGTGCCTCGACTATATTTCAAATGATTCTTGCCAGAAATGCATCGCCACAGTAACAGAGGAAATTGTCAAACTGTGTCCTCAAGCAGAAGAAGCAATTGTGTGGGAAGAGTTGTGTCAGTTGCGTTATTCCAACAATAATTTCCTGGGTAGTTTGAATGTCACGGGGAACATTGGCTTAGACAATGTCCAGAATCTTACAGACTCAGAGAAGTTTGAGTCTGCTGTGAATGAGACACTGAGGAATCTTACTAAGGTAGCATCTTTTAAAGTTTCGGCTAACATGTATGCTACTGGAGATGTCCCCTTTGAAGATGAAACAATATTTGCCTTAGTGCAGTGCACCAGAGATTTAACTGCAAATGATTGTAATAGGTGCCTACAAAGTGCCATTGGAGATATACCAAGTTGTTGCTATGCCTCCATCGGGGGAAGAGTTCTGAGCCGTAGCTGTTATTTAAGGTATGAATTTTATGCCTTCTATAATGGTGCAACAGGACCAACAGATTCTTCAAATGGCAACAGAGAAAGCAAAAATAGGTCCAGCAAAATATGGATGATTGCTGGAATTACAGTTGTGGTAGGCTTGGCCATAGTATTTTTCATTTTCGGACTGTACCTTGTCAGGAATAAAAGACATCCGAATGGTAAAAATGAAATAGAAAATCATAACATCAATCTTGGATCTCTTCGAGTAGCTACCAATAATTTTTCTGATATGAATAAGCTTGGACAAGGTGGCTTTGGCCCTGTTTACAAGGGGAAACTTAGTGATGGCCAAGAAGTAGCAATCAAGAGGTTGTCAACATGGTCCGAACAAGGCTCAGAGGAATTCATAAACGAGGTTCTTCTGATAATGAAGCTCCAGCACAAAAATCTTGTAAAGCTTCTTGGATTTTGTGTAGATGGAGAGGAGAAAATTCTTGTGTATGAATTTTTACCCAATGGTAGTCTCGATGTCGTACTCTTTAATCAAAAGCAACGTGCACAACTGGATTGGAGCAAACGCTTGAATATCATAAATGGAATAGCAAGAGGGATACTTTATCTTCACGAGGATTCTCGACTGAAAGTGATTCATAGAGATCTAAAAGCAAGTAATGTATTGTTAGATTATGACATGAATGCAAAGATCTCAGACTTTGGAATGGCAAGGATATTTTCAGGAAACGAAGGGGAAGCTAACACTGCTACAATAGTTGGCACATATGGGTACATGGCTCCTGAGTATGCAATGGAGGGATTATATTCCATAAAATCTGATGTGTTTGGGTTTGGTGTACTATTGCTTGAGATCATTACAGGGAAACGTAACGCGGGTTTCTATCACTCTAAAAACAGTCCTAGCCTTCTGTCATATGCATGGAGTCTATGGAATGAGGGAAAGGGGATAGAACTAAGTGATCCCTTGTTGTGCGATTCTTGCCCTGGAGATGAGTTTTTGAGATACATGCAGATTGGACTGCTGTGTGTTCAAGAGGATGCATATGATAGGCCAACCATGTCTTCTGTTGTGATGATGCTGAAGAATGAATCAGCTACGCTTGGCCATCCAGAAAAACCACCTTTCTCTGTAGGGAGATTCAATGCTAATGACCCAGATTCTCAAGAATGTTCACTCAATTTCTTAACCATGTCAGATATATTACCCCAGTAA	1890	0.3989	MHSKLIQLLLLCTFSLFSDVVFGDPPYTICSSSGSYVNGSSFENNLNNLLSSLSSNASDSKFYNTSYGIAPDTVYGLYMCLDYISNDSCQKCIATVTEEIVKLCPQAEEAIVWEELCQLRYSNNNFLGSLNVTGNIGLDNVQNLTDSEKFESAVNETLRNLTKVASFKVSANMYATGDVPFEDETIFALVQCTRDLTANDCNRCLQSAIGDIPSCCYASIGGRVLSRSCYLRYEFYAFYNGATGPTDSSNGNRESKNRSSKIWMIAGITVVVGLAIVFFIFGLYLVRNKRHPNGKNEIENHNINLGSLRVATNNFSDMNKLGQGGFGPVYKGKLSDGQEVAIKRLSTWSEQGSEEFINEVLLIMKLQHKNLVKLLGFCVDGEEKILVYEFLPNGSLDVVLFNQKQRAQLDWSKRLNIINGIARGILYLHEDSRLKVIHRDLKASNVLLDYDMNAKISDFGMARIFSGNEGEANTATIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNAGFYHSKNSPSLLSYAWSLWNEGKGIELSDPLLCDSCPGDEFLRYMQIGLLCVQEDAYDRPTMSSVVMMLKNESATLGHPEKPPFSVGRFNANDPDSQECSLNFLTMSDILPQ	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun2g02904	629	ProSiteProfiles	Gnk2-homologous domain profile.	132	238	IPR002902	-
	Viun2g02904	629	CDD	STKc_IRAK	321	588	-	-
	Viun2g02904	629	Gene3D	Phosphorylase Kinase; domain 1	285	390	-	-
	Viun2g02904	629	SMART	serkin_6	315	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g02904	629	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	436	448	IPR008271	GO:0004672\|GO:0006468
	Viun2g02904	629	FunFam	Cysteine-rich receptor-like protein kinase 28	26	125	-	-
	Viun2g02904	629	Pfam	Salt stress response/antifungal	30	123	IPR002902	-
	Viun2g02904	629	Pfam	Salt stress response/antifungal	142	235	IPR002902	-
	Viun2g02904	629	FunFam	Liguleless narrow1	391	594	-	-
	Viun2g02904	629	SUPERFAMILY	Protein kinase-like (PK-like)	301	616	IPR011009	-
	Viun2g02904	629	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	30	624	-	-
	Viun2g02904	629	ProSiteProfiles	Gnk2-homologous domain profile.	24	126	IPR002902	-
	Viun2g02904	629	ProSiteProfiles	Protein kinase domain profile.	315	598	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g02904	629	FunFam	Cysteine-rich receptor-like protein kinase 10	135	238	-	-
	Viun2g02904	629	Pfam	Protein tyrosine and serine/threonine kinase	318	585	IPR001245	GO:0004672\|GO:0006468
	Viun2g02904	629	Gene3D	Transferase(Phosphotransferase) domain 1	391	596	-	-
	Viun2g02904	629	Gene3D	-	26	126	IPR038408	-
	Viun2g02904	629	Gene3D	-	136	238	IPR038408	-
	Viun2g02904	629	FunFam	Cysteine-rich receptor-like protein kinase 10	286	390	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun2g02904	Viun-Chr2	33391133	33393942	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun2g02904	13	628	Receptor kinase-like Gene Family	AT4G05200	42.835	2.42e-174	510

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun2g02904		PK_Tyr_Ser-Thr	6.8e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun2g02904	-		-	gmx:102669364	1065.45