Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02896 ATGGCTACCCAACAATCTCTGTTAGAGAAGCCCAAAAAGCCCGTTTCCAAAACTATCTGCTTACTGCTTTCTGTAATCGCAGTTCTAAGCTCATCAGCTTTTATTGTTTCTTATGTCTTCAAACCATCCCTTAAACATGTCTGTGATCACGCACTTGATACTACATCCTGCTTAGCACATATCTCAGAAGTAACCCAAACTCACACGTTGGCCACAACAAAACACCACGAATTCAATTTGCTCAAATCATTCCTCATAAAACACACCTCACATATTGAGAAAGTCATGGGCACAACCAATGCTATGAAACTCAGGGTCAACAATCCGAGAGAGGAAGCAGCTTTGAAGGATTGTGTGGATCTGATGGAGTTGTCCTTGGACAGAGTTTGGAACTCCATGTTAGCACTCACAAAACAAACCACTGAGTCGCAACAAGATGCACACACGTGGCTAAGTAGCGTGCTAACCAATCATGCAACTTGCTTGGATGGATTAGAGGGTGCGGCTCGGAGTGTTATGGAGGATGAACTTGAGGACTTGAAATCTAGGGCAAGAACCTCTCTTGCCATTCTTGTTGAGACGGTTTTGCCTCCAAAGGTTGAACAGATAACTGACGAACCCTTACATGGGGGCTTTCCGTCGTGGGTTAGCAGCAGGGATCGGAGGCTGTTGGAGAGTGGGGTTGGGGACGTCAAGGCCAATGTCGTGGTGGCTCAGGATGGGAGTGGCAAGTTTAAGACCGTCACCGAGGCTGTCGCATCCGCACCGGACAACGGCAAGACAAGGTACGTTATTTATGTGAAGAAGGGAACATATAAAGAACATGTTGAAATTGGTAAGAAGAAGACAAACGTCATGCTCGTCGGTGACGGAATGGATGCAACTATAATCACCGGAAGCTTGAATTTCATCGACGGAACGACAACCTTCAACAGCGCCACCGTTGCTGCTGTGGGTGATGGGTTTATAGGTCAAGACATATGGTTTCAGAACACAGCGGGGGCGGCGAAACACCAAGCGGTGGCTCTTCGCGTAGGCGCCGACCAATCTGTGATAAACCGTTGTCGCATAGATGCCTTTCAAGACACTCTCTACGCACACTCGAACAGGCAATTCTACAGAGACTCTGTCATCACTGGCACCATTGACTTCATTTTTGGAAATGCCGCTGTTGTGTTCCAAAAGTGCAACTTGGTGGCCCGAAAGCCCATGAGTAACCAGAACAACATGGTGACGGCTCAAGGAAGAGAGGATCCAAACCAAAACACAGGAACTTCGATTCAACAATGTAACCTAACACCGAGTTCGGATCTGAAGCCTGTCGTGGGTTCCATTAAAACTTATCTGGGTCGACCTTGGAAGAAGTACTCGAGAACTGTTGTGATGCAGTCGTCGATAGAGAGCCATGTTGACCCAACGGGATGGGCAGAGTGGGATGCCCAGAGCAAGGACTTTTTGCAAACGTTGTATTACGGAGAGTACATGAACAGTGGAGCAGGTGCTGGAACCAGCAAGAGAGTGAAGTGGCCTGGTTACCATGTCATCACAAGTGCAACAGAGGCCAGCAAGTTCACAGTAACACAACTCATCCAAGGAAATGTTTGGTTGAAGAACACTGGGGTCAACTTCATTGAAGGTCTTTAA 1644 0.4745 MATQQSLLEKPKKPVSKTICLLLSVIAVLSSSAFIVSYVFKPSLKHVCDHALDTTSCLAHISEVTQTHTLATTKHHEFNLLKSFLIKHTSHIEKVMGTTNAMKLRVNNPREEAALKDCVDLMELSLDRVWNSMLALTKQTTESQQDAHTWLSSVLTNHATCLDGLEGAARSVMEDELEDLKSRARTSLAILVETVLPPKVEQITDEPLHGGFPSWVSSRDRRLLESGVGDVKANVVVAQDGSGKFKTVTEAVASAPDNGKTRYVIYVKKGTYKEHVEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFNSATVAAVGDGFIGQDIWFQNTAGAAKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSVITGTIDFIFGNAAVVFQKCNLVARKPMSNQNNMVTAQGREDPNQNTGTSIQQCNLTPSSDLKPVVGSIKTYLGRPWKKYSRTVVMQSSIESHVDPTGWAEWDAQSKDFLQTLYYGEYMNSGAGAGTSKRVKWPGYHVITSATEASKFTVTQLIQGNVWLKNTGVNFIEGL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02896 547 FunFam Pectinesterase 228 547 - -
Viun2g02896 547 CDD PMEI-like_4 50 192 - -
Viun2g02896 547 ProSitePatterns Pectinesterase signature 2. 378 387 IPR033131 -
Viun2g02896 547 SMART PMEI_2 39 190 IPR006501 GO:0004857
Viun2g02896 547 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 190 IPR035513 -
Viun2g02896 547 Pfam Pectinesterase 234 533 IPR000070 GO:0030599|GO:0042545
Viun2g02896 547 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 193 IPR035513 -
Viun2g02896 547 SUPERFAMILY Pectin lyase-like 232 546 IPR011050 -
Viun2g02896 547 Gene3D - 228 547 IPR012334 -
Viun2g02896 547 ProSitePatterns Pectinesterase signature 1. 259 278 IPR018040 -
Viun2g02896 547 Pfam Plant invertase/pectin methylesterase inhibitor 44 190 IPR006501 GO:0004857
Viun2g02896 547 PANTHER PECTINESTERASE 26 537 - -
Viun2g02896 547 NCBIfam pectinesterase inhibitor domain 20 181 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02896 Viun-Chr2 33337077 33339049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02896 3 547 Carbohydrate Esterase AT1G11580 56.050 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02896 K01051 - gmx:100815836 903.279