Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02894 ATGGCAACACACCAATCTCTGTTAGACAACCCTAGAAAATCCGTTTCCAAAACTATCTGCTTAATCTTCTCGGTAGCTGTTGTGCTAACTTCATCAGCTCTTATTGCTTCTTATCTCACAAAACCCACCCTCTTATTCAAAAACACCATCTCTCACCGTGTTTGTGATCATGCGGTTGATCCTTCAGCCTGCTTAGCACATGTCTCAGAAGTGGTACAAGATCCGATCTTTAGTGCCACGCAAAACCACAAATTCGGCTTGCTCCAATCCTTTTTAATGAAATCCACCTCACACATTGAGAGAGTGATGGGGGCAACCAACGCCATGAGGGTGAGGATGAACGATCCAAGAGAAGAAGCTGCCTTGCGGGACTGCGTGGAGCTGATGGAGTTATCCATGGACAGAGTTTGGGACTCGAAGGTTAGCCTAACCAAAGGGACCACCGATTCGGCGCGAGATGCACACACTTGGCTAAGCAGCGTGCTCACTAATCATGTAACTTGCTTGGACGGATTGGAGGGGCGAGCTCGAACGGTAATGGAGGCAGAGCTTCAGGACTTGGTCTCGAGAGCAAGAACCTCTTTAGCCATGTTTGTTGCTGTTTTGCCTCCAAATCCAGAGCTTGAAGTCGTGCCGCTAAATGGGAAGTTTCCCTCGTGGGTGGGAAGCAAGGATCGGAGGCTGTTAGAGTCTTCCGCCGGAGAGATCAAGCCGAACGTTGTGGTGGCTAAGGACGGGAGTGGTGACTTTACGACTGTTGCCGAAGCTGTGGCGTCGGTACCCGATAAAAGCAAGACGAGGTATGTTATTCATGTGAAGAAGGGAACGTATGAAGAGAAAGTTGAAATCGGTAAGAGAAAGAAGAACGTGATGCTGGTGGGTGACAGCATGGATACAACCATCATCACCGGAAGCCTGAACTACATCGATGGAACGGGCACTTTCCAGACTGCTACTGTTGCGGCGGTTGGGGATGGGTTCATAGCCCAAGACATTTGGTTTCAAAATTCAGCAGGCCCAGAAAAGCACCAGGCAGTGGCTCTCCGCGTGGGCGCTGATTTATCCGTGATAAATCGTTGCCGCGTGGACGCATATCAAGACACGCTCTACGCCCATTCCAACAGACAGTTCTACCGCGACACCTTGGTTACAGGCACCATTGACTTCATCTTCGGAAACGCAGCTGCTGTCTTCCAGAACTGTACTCTGGAGGCCCGAAAGCCCATGAAAAATCAGAAAAACATGGTGACAGCCCAAGGACGAACAGACCCAAACCAAAACACAGGAACTTCGATTCAACAGTGTAACCTCACCCCCAGCGAGGATCTTACGCCCGTCATAGACTCTTTCCAAACCTTTTTGGGCCGCCCGTGGAAGAACTTCTCGAGGACTGTCGTTATGCAATCCTATCTGGACAGGCATATTGACCCAAAGGGATGGGCCGAATGGGATAACCAACATAAAGACTATTTGGAAACCCTGTATTATGGAGAGTACATGAACAGAGGACCAGGTGCTGGTACCAGTAAAAGAGTGAATTGGACTGGTTACCACATCATCAAATCTGCAGCCGTGGCTAACCAGTTCACAGTAAAAAACCTCATCCAAGGTGATGCTTGGTTGAAGAACACTGGGGTCAACTTCATTGAAGGTCTATAA 1659 0.4913 MATHQSLLDNPRKSVSKTICLIFSVAVVLTSSALIASYLTKPTLLFKNTISHRVCDHAVDPSACLAHVSEVVQDPIFSATQNHKFGLLQSFLMKSTSHIERVMGATNAMRVRMNDPREEAALRDCVELMELSMDRVWDSKVSLTKGTTDSARDAHTWLSSVLTNHVTCLDGLEGRARTVMEAELQDLVSRARTSLAMFVAVLPPNPELEVVPLNGKFPSWVGSKDRRLLESSAGEIKPNVVVAKDGSGDFTTVAEAVASVPDKSKTRYVIHVKKGTYEEKVEIGKRKKNVMLVGDSMDTTIITGSLNYIDGTGTFQTATVAAVGDGFIAQDIWFQNSAGPEKHQAVALRVGADLSVINRCRVDAYQDTLYAHSNRQFYRDTLVTGTIDFIFGNAAAVFQNCTLEARKPMKNQKNMVTAQGRTDPNQNTGTSIQQCNLTPSEDLTPVIDSFQTFLGRPWKNFSRTVVMQSYLDRHIDPKGWAEWDNQHKDYLETLYYGEYMNRGPGAGTSKRVNWTGYHIIKSAAVANQFTVKNLIQGDAWLKNTGVNFIEGL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02894 552 CDD PMEI-like_4 57 201 - -
Viun2g02894 552 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Viun2g02894 552 SMART PMEI_2 46 197 IPR006501 GO:0004857
Viun2g02894 552 Pfam Plant invertase/pectin methylesterase inhibitor 52 190 IPR006501 GO:0004857
Viun2g02894 552 PANTHER PECTINESTERASE 25 542 - -
Viun2g02894 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 201 IPR035513 -
Viun2g02894 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 198 IPR035513 -
Viun2g02894 552 FunFam Pectinesterase 3 52 201 - -
Viun2g02894 552 NCBIfam pectinesterase inhibitor domain 22 177 IPR006501 GO:0004857
Viun2g02894 552 FunFam Pectinesterase 233 552 - -
Viun2g02894 552 SUPERFAMILY Pectin lyase-like 237 551 IPR011050 -
Viun2g02894 552 Gene3D - 233 552 IPR012334 -
Viun2g02894 552 Pfam Pectinesterase 239 538 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02894 Viun-Chr2 33325507 33327482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02894 3 552 Carbohydrate Esterase AT1G11580 53.191 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02894 K01051 - gmx:100815836 827.009