Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02892 ATGTTTCACACAAACATGTTTGATTCTCACTCTCACATGCTTGATATGTCACCACACAAAACTACTTTCTCTGAAGCTGACCCGGGAAAGCCCAGAGATGATGAATATGAAACCAAGTCTGGCACTGACTTGGACGCTCCTTCCGGCGACGACCAAGACCCCAACCCAAGACCCAGAAAGAAGGGTTACCGTCGCCACACACAGCGCCAGATAGAAGAAATGGAAGCCTTCTTCAAGCAGTGTCCTCACCCAGACGACAAGCAAAGAAAAGAACTGAGCCGGGATTTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACTCAGCATGAACGACATGAAAATTCTATTCTGAAGGCCGAAAACGAAAAGCTTCGCGCTGAGAACAACAGGTACAAGGAGGCCCTAACCAATGCTACATGCCCCAACTGTGGAGGACCAGCTGCCCTTGGCGAAATGTCCTTCGACGAACAGCACTTGAGGATTGAGAACGCTCGGTTAAGAGAAGAGATTGATAGGATTTCAGGAATTGCGGCCAAGTACGTTGGAAAACCCGTGACATCTTCGTACTCCAACCTTTCATCACTCAACAACAATCACATGCCTGTCGGGAACTATGGAGCACAGTCAGGCACTGTAGGAGAAATGTATGGTGGTAGTGACCTTTTCAGGTCACTCCCAGCTCCAGCTGATGCTGACAAGCCCATGATCGTGGAGCTTGCTGTTGCAGCGATGGAGGAACTCACAAGACTAGCTCAGGCTGGAGACTCGTTATGGGTCCCCGGGAACCACCACTGTGAGATTCTGAATGAAGAAGACTATTTGAGGACTTTCCCTAGCAGAGGTTTAGGTCCCAAACCTCTGGGCTTGAGATCTGAAGCTTCAAGGGAATCTGTGGTGGTCATCATGAATCACATTAACCTCATCGATATCCTTATGGATGTGAACCAATGGTCAACTATGTTTTGCGGTATTGTCTCGAGAGCATTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAATGGAGCCTTGCAAGTGATGTCTGCAGAGTTCCAAGTCCCTTCACCGCTTGTTCCTACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCAACCGGATGGGATATGGGCGGTGGTGGATGTTTCTTTGGATAATCTGCGACCCAGTACGATCTCAAGAAGCCGAAGAAGACCCTCTGGATGTTTAATTCAAGAATTGCCAAATGGTTACTCCAAGGTTACATGGATCGAACATGTAGAAGTGGATGATAGGGCGGTGCATAGCATATATAAAACCCTAGTCAATTCCGGTCTCGCCTTTGGAGCTAAACGCTGGGTGGCTACATTAGACAGACAATGCGAACGTCTTGCCAGTTCAATGGCCAACAACATACCAGCTGGGAACCTCTGTGTGATAACCAGTGCTGAGGGAAGAAAAAGTATGCTGAAGCTGGCAGAGAGAATGGTTATTAGCTACTGCACTGGTGTAGGTGCTTCTACTGCACATGCTTGGACAACACTGTCTGCAACTGGATGTGATGATGTAAGGGTCATGACTAGAAAGAGCACTGACGAACCTGGCAGACCACCCGGTATAGTGCTCAGTGCTGCCACTTCTTTCTGGCTCCCAGTTCCTCCAAAGAGGGTTTTTGATTTCCTACGCGATGAAAACTCAAGAAATGAGTGGGACATTCTCTCTAATGGGGGTCTAGTTCAAGAATTGGCACACATAGCAAATGGCCGTGATCCTGGCAACTGTGTCTCCCTACTTAGAGTCAATAGTACAAATTCAAGCCAAAGTAATATGCTGATACTTCAAGAGAGTTGCACTGATTCTACTGGATCATATGTAGTTTATGCTCCTGTGGATATTGTAGCTATGAATGTAGTGTTGGGTGGAGGGGATCCAGATTATGTTGCCTTGCTTCCCTCAGGCTTTGCTATTCTTCCTGATGGACCTGGAATAAACGGTGGGTCAATACTTGATGTTGGATCAGGAGGTTCTCTACTCACAGTTGCCTTCCAGATCTTGGTTGATTCAGCCCCAACAGCAAAACTATCTTTGGGTTCAGTGGCAACTGTTAACAGTCTAATTAAGTGCACAGTTGAAAGGATCAAGGTCGCAGTGATACGTGACAACACCTAA 2181 0.4713 MFHTNMFDSHSHMLDMSPHKTTFSEADPGKPRDDEYETKSGTDLDAPSGDDQDPNPRPRKKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRDLGLEPLQVKFWFQNKRTQMKTQHERHENSILKAENEKLRAENNRYKEALTNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSSYSNLSSLNNNHMPVGNYGAQSGTVGEMYGGSDLFRSLPAPADADKPMIVELAVAAMEELTRLAQAGDSLWVPGNHHCEILNEEDYLRTFPSRGLGPKPLGLRSEASRESVVVIMNHINLIDILMDVNQWSTMFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQQPDGIWAVVDVSLDNLRPSTISRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHSIYKTLVNSGLAFGAKRWVATLDRQCERLASSMANNIPAGNLCVITSAEGRKSMLKLAERMVISYCTGVGASTAHAWTTLSATGCDDVRVMTRKSTDEPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGLVQELAHIANGRDPGNCVSLLRVNSTNSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVLGGGDPDYVALLPSGFAILPDGPGINGGSILDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVIRDNT 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02892 726 ProSiteProfiles START domain profile. 238 470 IPR002913 GO:0008289
Viun2g02892 726 FunFam Homeobox-leucine zipper protein GLABRA 2 247 466 - -
Viun2g02892 726 CDD homeodomain 60 118 IPR001356 GO:0003677
Viun2g02892 726 Gene3D - 312 468 IPR023393 -
Viun2g02892 726 SUPERFAMILY Bet v1-like 488 717 - -
Viun2g02892 726 MobiDBLite consensus disorder prediction 25 58 - -
Viun2g02892 726 Pfam Homeodomain 60 115 IPR001356 GO:0003677
Viun2g02892 726 SUPERFAMILY Homeodomain-like 46 117 IPR009057 -
Viun2g02892 726 CDD START_ArGLABRA2_like 242 466 - -
Viun2g02892 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 57 721 IPR042160 -
Viun2g02892 726 SMART START_1 247 467 IPR002913 GO:0008289
Viun2g02892 726 FunFam Homeobox-leucine zipper protein HDG1 48 133 - -
Viun2g02892 726 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Viun2g02892 726 SUPERFAMILY Bet v1-like 239 469 - -
Viun2g02892 726 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Viun2g02892 726 SMART HOX_1 59 121 IPR001356 GO:0003677
Viun2g02892 726 Coils Coil 111 146 - -
Viun2g02892 726 Pfam START domain 248 467 IPR002913 GO:0008289
Viun2g02892 726 Gene3D - 48 133 - -
Viun2g02892 726 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02892 Viun-Chr2 33313681 33321151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02892 1 724 Homeobox Transcription Factor Family AT4G04890 77.584 0.0 1166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun2g02892 START 5.9e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02892 K09338 - gmx:100815499 1355.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02892 2 33313681 33321151 Viun2g02892 2 33313681 33321151 ECH
Viun7g03486 7 36510341 36515694 Viun2g02892 2 33313681 33321151 ECH
Viun2g02892 2 33313681 33321151 Viun7g03486 7 36510341 36515694 PCT