Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02882 ATGGAGGCAATTTCGGAATTACCCCTCCGATCTGGCACTCACTCGCGTGTTCAAATCCTGAATTCCATTTGGAGCACTCTTTTTTTTCCTTCTTCCGCCTCTTCTTCTTCTCTTGCGCTCCTTGTTTCTCAACACTTTGGGTTGCGTCTCCTAGAGACAGAGAGACAGAGGGACCTTCTCCTCCTTCTTCTTCTTCTCCTTCTTCTCTTGTCCATGGACCTTCACAACCGACCAGATCACTGTTTCCCGGAGAAGAAAGGTCAGAAGAGGAAGTTGGAGGAGGATTTCGAAGACGACCGACAGATCTCCGCCCCTCCCACCGGCCACGCTCGAGACGCCCTCCTCTCCGACGTCAACGAACAGGTTATCGTCCTCGATTCCACCTTCTCATGGAAGGAATCCGATCGTGCTGCCGCCAAGCGCGCCACGCACGCCCTCGCCGATCTCGCCAAGAACGAGGAAGTGGTGAACGTGATTGTTGAAGGAGGCGCAATTCCTGCTTTGGTTAAACATCTTCAAGCGCCTCCTCTGGCTGGAAGCGACCGGTTGCAGAGGCCAATGCCGTTTGAGCACGAGGTCGAGAAAGGTAGTGCTTTCGCGCTTGGACTTCTCGCAGTCAAGCCGGAGCACCAGCAGCTCATCGTTGACAGTGGTGCTTTGAAACATCTCGTTGATCTTTTGAAGAGACATGAAAATGGCTTAACATCTCGTGCCATTAATAGTCTAATTCGTAGGGCTGCAGACGCGATTACTAATCTTGCTCACGAGAACAGCAGTATTAAGACTCGTGTCAGGATGGAAGGTGGGATTCCACCGCTAGTTCATTTACTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCATTGCGAACCCTGGCTTTCAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCCCTTCCAACTCTGATTCTAATGCTCCGTTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCCCCTAACATAAAGAAAGAAGTTCTTCTTGCTGGAGCCCTACAACCGGTCATTGGATTACTTAGCTCCTGTTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTTCAGAGGGGTGCTGTCCGACCTCTGATAGAGATGCTTCAGTCCCCTGATGTTCAGCTAAAAGAAATGTCTGCTTTTGCATTGGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGCTTGATTCCATTACTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGGCCGATTTTATTAGGGTAGGTGGAATTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAAGCAACTAAGGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCATGGGCGAGTGCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAGAAGGCTTTTCAAAGAAGAGTTGCTTTGGCTCTTGCTCACCTTTGTTCTGCAGATGACCAGAGAAAAATATTTATCGATCACCATGGTTTGGAGTTGCTTATGGGCCTTCTTGGCTCGTATTATAACCCTAAGCAACAACTTGATGGAGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCACAACTCTGTCTCCCGTAGATGCTGCACCCCCATCTCCCACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCCACCTTGTCTGACGTTACATTTCTGGTTGAAGGCAAACGATTTTATGCTCACAGAATTTGTCTGCTTGCATCTTCAGACGCATTTCGTGCTATGTTTGATGGAGGTTATAGGGAGAAGGAGGCACGGGACATAGAGATTCCAAACATTAGATGGGAGGTTTTTGAGCTGATGATGAGATTTATATACACTGGATCAGTTGAGATCACGCTTGATATTGCCCAAGATCTCCTCCGAGCAGCTGATCAATATCTTTTAGAAGGACTCAAGAGACTCTGTGAGTACACGATTGCACAGGATATATCACTTGAGAGCGTATCAAGTATGTATGAACTTTCTGAAGCATTTAATGCTATATCGTTGAGGCACACATGCATTCTTTTTATCTTGGAACACTTTGATAAATTGAGTGGAAAGCCAGGACACTCCCATCTGATTCAGCGTATAATACCTGAGATCCAGAATTACTTTGTTAAAGCCCTTACAAAGGCCAATTCCAACAATCACCCGTAG 2337 0.4613 MEAISELPLRSGTHSRVQILNSIWSTLFFPSSASSSSLALLVSQHFGLRLLETERQRDLLLLLLLLLLLLSMDLHNRPDHCFPEKKGQKRKLEEDFEDDRQISAPPTGHARDALLSDVNEQVIVLDSTFSWKESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPLAGSDRLQRPMPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHENGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQDTHNQAGIAHNGGLIPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCSADDQRKIFIDHHGLELLMGLLGSYYNPKQQLDGAVALCKLANKATTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFIYTGSVEITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLESVSSMYELSEAFNAISLRHTCILFILEHFDKLSGKPGHSHLIQRIIPEIQNYFVKALTKANSNNHP 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02882 778 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 163 219 IPR000225 GO:0005515
Viun2g02882 778 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 310 352 IPR000225 GO:0005515
Viun2g02882 778 SUPERFAMILY ARM repeat 139 481 IPR016024 -
Viun2g02882 778 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515
Viun2g02882 778 Pfam Armadillo/beta-catenin-like repeat 264 296 IPR000225 GO:0005515
Viun2g02882 778 Pfam Armadillo/beta-catenin-like repeat 299 338 IPR000225 GO:0005515
Viun2g02882 778 FunFam Armadillo/beta-catenin repeat family protein 603 747 - -
Viun2g02882 778 SUPERFAMILY POZ domain 604 706 IPR011333 -
Viun2g02882 778 Pfam BTB/POZ domain 605 707 IPR000210 GO:0005515
Viun2g02882 778 Gene3D - 367 590 IPR011989 -
Viun2g02882 778 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 268 303 IPR000225 GO:0005515
Viun2g02882 778 CDD BTB_POZ_ARIA_plant 599 714 - -
Viun2g02882 778 Gene3D Potassium Channel Kv1.1; Chain A 592 741 IPR011333 -
Viun2g02882 778 MobiDBLite consensus disorder prediction 84 108 - -
Viun2g02882 778 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 436 IPR000225 GO:0005515
Viun2g02882 778 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 79 775 IPR044282 -
Viun2g02882 778 Gene3D - 241 366 IPR011989 -
Viun2g02882 778 Gene3D - 112 240 IPR011989 -
Viun2g02882 778 SUPERFAMILY ARM repeat 506 583 IPR016024 -
Viun2g02882 778 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Viun2g02882 778 MobiDBLite consensus disorder prediction 84 105 - -
Viun2g02882 778 SMART BTB_4 612 709 IPR000210 GO:0005515
Viun2g02882 778 SMART arm_5 207 255 IPR000225 GO:0005515
Viun2g02882 778 SMART arm_5 299 339 IPR000225 GO:0005515
Viun2g02882 778 SMART arm_5 152 206 IPR000225 GO:0005515
Viun2g02882 778 SMART arm_5 383 423 IPR000225 GO:0005515
Viun2g02882 778 SMART arm_5 341 381 IPR000225 GO:0005515
Viun2g02882 778 SMART arm_5 424 464 IPR000225 GO:0005515
Viun2g02882 778 SMART arm_5 539 580 IPR000225 GO:0005515
Viun2g02882 778 SMART arm_5 257 297 IPR000225 GO:0005515
Viun2g02882 778 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 218 268 IPR000225 GO:0005515
Viun2g02882 778 ProSiteProfiles BTB domain profile. 612 679 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02882 Viun-Chr2 33206185 33214154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02882 367 481 U-box Gene Family AT3G46510 30.769 2.13e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Viun2g02882 BTB 3.3e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02882 - - pvu:PHAVU_002G047400g 1342.41