Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02872 ATGTCTTCAGCTATCTTTTTGCCTTGCATTGCTGCACTTCTTTCACTTTCAAATCTGAAACCTTTACATGCCATACAATCAAATACAATCATCACTGCTGGATCCAATTCTACCTGGAAATCTTCCTCCACTGATTTTGAATTTGGATTCTACACTCTTCCCAATGGTCTCTTTCTCGTGGGAATATGGTTTGGGAGAATCCCTGAGAGAACGCTGGTGTGGTACCTGGCTCCCCCCGTGGAACCAAATTCCCAAATCCAATTCACTTCTTCAGGACAGCTTGTGGTAGTCCACCCAAACGGGACTACTGCTCAGACCATCTACAGCGGAGGAAACGGTGGCGCGGCAACATCAGCCACCATGCAAGACGACGGCAATTTTGTGATGAAGAACTCCAACTTAAGACCTGTGTGGGAGAGTTTCAGCTTTCCAGCGGACACAATCTTGCCAGGCCAAACCTTGCAGACTAATCAGAGCCTCTATTCCAAGGGGAGAGGACCTTCAAACTACTCATTGGGAAATTTCATGCTGCAAATGCAAGGTGATGGCAACTTGTTGCTCAAAGCTCACCAATGGGCTGACCCTGCATACTGGTACACTTCAACCACCACCCCAAATGTGACTTTGGTGTTTAATTCTACCACTGCTCTCATGTACCTTGTCGGCGACGGCAGCGGCGGCGGGAACATCTACTCTATAACCAACACCACTCCAACCCCGGTGGAGGATTATTATCATCGCGCTGCAATAGATGAGAATGGGAATTTCCAGCAATATGCATATCACAAAAGGAACGGGAGCGGTTGGAGCAGGGTTTGGAGAGCCGTGGAGGATCCCTGCAGAGTGAATGTTGTGTGTGGTGTGTATGGCTTGTGCAGTTCTCCTGACAATGAATCAGTGAAGTGTGAGTGTATTCCAGGTTATATCCCTTTCGATGATCAAGATGTTTCAAAAGGGTGTCATCCACCAGCTGTCACCAATTTCTGCGCAGAGACCAACTTCAGCCTCCAAGTTTTTGACGACACTGATTTCCAATTTAATACTGATTTTGTTCGCTTATCTGGTTTTGACTTAGAAAGTTGTAAGAAGGCTGTCATAGATGATTGTAATATCGGTGCTGCAACTTATAGCCAATCCACCTCCACATGTGTCAAGAAGAGACTGCCCTTGCTGAATGCTAGAAATAGCACTTCTTCGAAGGGACTGAAAGCGCTGCTTAAAGTTGCTGACAGGGTTGATTCTGGGACACCTGAAGTTTCCAAGAAGAGAAGTTTTAATGTAAGAGTCCTTCTGAAGGTTCTTGTTGCTGTTACTGCCACTCTTGCCTGTTTCTTGGGTGCCCTTGCTGTCTACTATCATCCTTTCACTCGGAGACTCACAAGAAGAAAGAAGCATATGAATGCAACAGCTATTGGAATCAACTTCAGAGAATTCACCTTTCAGGAGCTGCATGAAGCGACAGACGGATTCACTAGGATTCTTGGAAGGGGAGGTTCGGGAAAAGTCTATCGTGGTGCTTTAATAATAGATGGTGCAGAGATCGGTATTGCAGTAAAGAAACTGGAAAAGAAAATAGAGAAGAGTGAAAGAGAATTCATGACTGAGCTCAGAATTATTGGTCGTACGCATCACAGAAATTTGGTGAGGCTTTTGGGGTTTTGCATTGAGAGTAGCCATCGAATTCTTGTGTATGAGTTGATGCCACACGGTGCCCTCTCTAGTTATTTGTTTGGAGAGGGAGAAAGGCCTGAATGGGGTCAGAGGATTGAAATGGCTCTTGGGGTCGCAAGAGGGTTGCTATACTTGCACGAAGAGTGCAACACCCAAATCATACATTGTGACATAAAGCCCGAAAATGTGTTACTTGATGCCAATTACACACCAAAGATTGCAGATTTTGGACTGTCGAAGCTTTTGAACAAAGATCAAACTAGAACAAACACTAATTTGAGAGGGACGATGGGATACATGGCACCTGAATGGCTAAGGAGTGCGCCGATAACTGCTAAAGTTGACATCTACAGTTTTGGGGTTATGCTTTTGGAGATTATTTGCTGCAGGAGGCACATTGAGTGTTGTGAGGATGGAAAAAACAGTGAAGATGATGATTTGGTTCTTTCAAATTTTGTTTTAAGGTGTGTGGTGTGTAGGCAACTAGAGTTAGTGGTGAGAGATGACACAGAAGTGCTGAATGATTTCAAGAAGTTTGAGGAAATGGCCTTGGTTGGACTGTGGTGTGTTCATCCAAATCCTGCTCTGAGGCCTTCGATGAAGCACGTGATGCAAATGCTAGATGGAACCGTGGAAGTTGGTGTTCCTCCTTTGGTTTACGACATGATGATGTCAGATCAGACTTATATAGTATGA 2367 0.4487 MSSAIFLPCIAALLSLSNLKPLHAIQSNTIITAGSNSTWKSSSTDFEFGFYTLPNGLFLVGIWFGRIPERTLVWYLAPPVEPNSQIQFTSSGQLVVVHPNGTTAQTIYSGGNGGAATSATMQDDGNFVMKNSNLRPVWESFSFPADTILPGQTLQTNQSLYSKGRGPSNYSLGNFMLQMQGDGNLLLKAHQWADPAYWYTSTTTPNVTLVFNSTTALMYLVGDGSGGGNIYSITNTTPTPVEDYYHRAAIDENGNFQQYAYHKRNGSGWSRVWRAVEDPCRVNVVCGVYGLCSSPDNESVKCECIPGYIPFDDQDVSKGCHPPAVTNFCAETNFSLQVFDDTDFQFNTDFVRLSGFDLESCKKAVIDDCNIGAATYSQSTSTCVKKRLPLLNARNSTSSKGLKALLKVADRVDSGTPEVSKKRSFNVRVLLKVLVAVTATLACFLGALAVYYHPFTRRLTRRKKHMNATAIGINFREFTFQELHEATDGFTRILGRGGSGKVYRGALIIDGAEIGIAVKKLEKKIEKSEREFMTELRIIGRTHHRNLVRLLGFCIESSHRILVYELMPHGALSSYLFGEGERPEWGQRIEMALGVARGLLYLHEECNTQIIHCDIKPENVLLDANYTPKIADFGLSKLLNKDQTRTNTNLRGTMGYMAPEWLRSAPITAKVDIYSFGVMLLEIICCRRHIECCEDGKNSEDDDLVLSNFVLRCVVCRQLELVVRDDTEVLNDFKKFEEMALVGLWCVHPNPALRPSMKHVMQMLDGTVEVGVPPLVYDMMMSDQTYIV 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02872 788 ProSiteProfiles Protein kinase domain profile. 488 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02872 788 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 202 IPR036426 -
Viun2g02872 788 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 567 772 - -
Viun2g02872 788 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 31 774 - -
Viun2g02872 788 Gene3D Phosphorylase Kinase; domain 1 460 566 - -
Viun2g02872 788 Gene3D Transferase(Phosphotransferase) domain 1 567 770 - -
Viun2g02872 788 Pfam D-mannose binding lectin 79 159 IPR001480 -
Viun2g02872 788 SMART blect_4 32 144 IPR001480 -
Viun2g02872 788 Coils Coil 518 538 - -
Viun2g02872 788 Pfam S-locus glycoprotein domain 242 310 IPR000858 GO:0048544
Viun2g02872 788 SMART serkin_6 488 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02872 788 Pfam Protein kinase domain 492 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02872 788 ProSiteProfiles Bulb-type lectin domain profile. 22 142 IPR001480 -
Viun2g02872 788 FunFam S-receptor-like serine/threonine-protein kinase 457 566 - -
Viun2g02872 788 Gene3D - 144 280 - -
Viun2g02872 788 PIRSF SRK 1 786 IPR024171 GO:0004674
Viun2g02872 788 Gene3D - 23 143 IPR036426 -
Viun2g02872 788 SUPERFAMILY Protein kinase-like (PK-like) 475 777 IPR011009 -
Viun2g02872 788 CDD STKc_IRAK 494 766 - -
Viun2g02872 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Viun2g02872 788 ProSitePatterns Protein kinases ATP-binding region signature. 494 520 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02872 Viun-Chr2 33144365 33147274 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02872 420 769 Receptor kinase-like Gene Family AT5G45780 36.901 4.77e-65 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Viun2g02872 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02872 - - gmx:102662509 1200.65