Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02871 ATGGCTGCTGCTGAATTTCTTGTCATGCTTCTGTTTTTCAATGTTCCAAGCATCGCCATTTCAATTGAACTGGGATCCAGCATTGTGGCTGGAAGTGCCACCAATTCATCTTGGCGATCATCCTCCGGGGAATATGCTTTTGGATTCTACCACCTTGTTAGTGGCCGTTATCTTGTTGGTATTTGGTTTGACAAAATTCCAGAGAAAACATTAGTTTGGTCTGCAAACCGTGACAACCCAGTTGAAATTGGATCATCCATCAATCTCACACGAAGTGGCCAATTTGTGCTCCAACCTCTCAACGGGGATTCATTCCCCATATACGAAGGAACAAACGCTGCATCAGCAGAAATGAACGATGACGGGAATTTCGTCTTGAAGAATTCACTTTCCAACGTTATATGGCAGAGCTTTGATTCACCCACGGATACTCTTCTATTAGGCCAAACCTTGAATACCAGTCGGAAGCTCTACTCCAATGCCAATGGATCAGTTGACTACTCAACTGGACAATACAGTTTGGAGATCCAACAATCTGATGGAAACATTGTTCTTAAAGCGTATCGGTTCACAGATTCTGCCTACTGGTGGAGTGACACTGCCCAAAACACAGGTGTTAGAATTATTTTTGACAACACAACAGCTTTTCTTTACGCGGTCAATGCCACTAACCAAATTATATTTAACATGACTACTGAAGTAGTGGGTGCAATCGAAGATTACTATCATCGTGTGTTGGTGGATGACAAGGGAAACTTTCAGAAGTTGATTTACCACAAACGAAATGGAAGCGAGTGGAGATCTGTGTGGCAGGCCGTAACAAAGCCTTGCACTGTGACTGCCCTCTGTGGGGTGTATGGTTTTTGCAACACATCTGGTTCTGACACCCAAACATACAGTTGCGGTTGCTTGCCAGGCTATACTCCTTTGGATCCAACAGCACCATCCAAGGGGTGCTATCTCAGTGAGGTCAAGGATTTGTGTGCTGCAAATTCTTCTGCCTCAGACTTTGAGGTGGAAGTGAAAGAGATTCAAGATGCTGATATACCAAACTCCGGTTACTTTTTTCTTGATCTGCAAGTCTTGGATGGGATGGATTTGGAAAGCTGCAAGAGGGAACTGATGGATGATTGTCTCTGCATCGCTGCTGTTTTAGATGGCACTGCTTGCCATAAGAAAAAGTGGCCAATTATAAATGCCATAAGAATCATCCCTGACACTAGCAATCGTGTGATGCTGATTAAAGTTCCTCTGCTTGACAACAACAAGGACAATGAAAGGGATTCATCGTCTGTGGTTGTTTTGGTAGTGGCTCTCATTTCTTGCTCCCTACTTGCTGTCCTGTTTGCAGCCACTGCCATTTATCATCACCCCGTTGGTCAGCATCTCATGCACAAACAAGCACCACCAAAGCCAAAGCCTATGGATATCAATCTAAAGGTATTTTCATTCCAACAGCTGAGAGAAGCAACTAATGGATTCAAAGACAAACTTGGTCGAGGTGCCTATGGTACGGTGTATAGTGGGGTTTTAAACTTGGAGGATCAACAGGTTCATGTTGCTGTCAAACAACTGGAGCAAGTAGAAGACCAAGGTGATAAAGAATTTGTGACAGAAGTTCAAGTTATTGCTCTCATTCATCACAGAAATCTTGTTAGCTTATTAGGATTTTGCAATGAGCAGAGTCATAGGCTTTTGGTTTATGAGAAAATGGAAAACGGAACACTATCCAACTTCCTTTTCGATGAAGGCGATAAACCCAGCTGGGAAAGTAGAGTCAGAATTGTGCTTGAAATTGCAAGAGGTTTGCTATATCTGCATGAAGAGTGTGACCATCAAATCATCCACTGTGACATAAAGCCTCAGAATGTTCTGCTTGACTCTAATTACACTGCAAAGATCTCAGATTTTGGACTGGCAAAGTTGCTGATGAAAGATAAAACTCGAACAAACACCAATGCTAGAGGGACAGTGGGATATATGGCACCAGAATGGCTCAAAAATGCACCTGTTACTGCAAAGGTTGATATCTACAGCTTTGGTGTGGTGTTGCTGGAAATCATATTTTGCAGAAGGCACATCGAGTTGCATGAAATTGAGGATGGAACAAGGGGTGATGACATGATACTCGTGGACTGGGTTCTATATCTAGCAATGGAAAACAATTTAAGAGGCGCAGTGATTGATGATGTTGAAGTTGAAAGTGATTTCAATAGGTTCGAAAGAATGGCAATGGTAGGTTTATGGTGTATAAATCCCAATCCAAATCTTCGACCAACTATGAAAATTGTGGTACAAATGTTGGAAGGAAACGTAGAAGTGGGTGTTCCACCACTCAATTGA 2343 0.4259 MAAAEFLVMLLFFNVPSIAISIELGSSIVAGSATNSSWRSSSGEYAFGFYHLVSGRYLVGIWFDKIPEKTLVWSANRDNPVEIGSSINLTRSGQFVLQPLNGDSFPIYEGTNAASAEMNDDGNFVLKNSLSNVIWQSFDSPTDTLLLGQTLNTSRKLYSNANGSVDYSTGQYSLEIQQSDGNIVLKAYRFTDSAYWWSDTAQNTGVRIIFDNTTAFLYAVNATNQIIFNMTTEVVGAIEDYYHRVLVDDKGNFQKLIYHKRNGSEWRSVWQAVTKPCTVTALCGVYGFCNTSGSDTQTYSCGCLPGYTPLDPTAPSKGCYLSEVKDLCAANSSASDFEVEVKEIQDADIPNSGYFFLDLQVLDGMDLESCKRELMDDCLCIAAVLDGTACHKKKWPIINAIRIIPDTSNRVMLIKVPLLDNNKDNERDSSSVVVLVVALISCSLLAVLFAATAIYHHPVGQHLMHKQAPPKPKPMDINLKVFSFQQLREATNGFKDKLGRGAYGTVYSGVLNLEDQQVHVAVKQLEQVEDQGDKEFVTEVQVIALIHHRNLVSLLGFCNEQSHRLLVYEKMENGTLSNFLFDEGDKPSWESRVRIVLEIARGLLYLHEECDHQIIHCDIKPQNVLLDSNYTAKISDFGLAKLLMKDKTRTNTNARGTVGYMAPEWLKNAPVTAKVDIYSFGVVLLEIIFCRRHIELHEIEDGTRGDDMILVDWVLYLAMENNLRGAVIDDVEVESDFNRFERMAMVGLWCINPNPNLRPTMKIVVQMLEGNVEVGVPPLN 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02871 780 ProSiteProfiles Bulb-type lectin domain profile. 25 139 IPR001480 -
Viun2g02871 780 Gene3D - 142 282 - -
Viun2g02871 780 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 33 778 - -
Viun2g02871 780 SUPERFAMILY Protein kinase-like (PK-like) 472 769 IPR011009 -
Viun2g02871 780 ProSiteProfiles Protein kinase domain profile. 492 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02871 780 CDD B_lectin 40 141 IPR001480 -
Viun2g02871 780 FunFam S-receptor-like serine/threonine-protein kinase 462 570 - -
Viun2g02871 780 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 200 IPR036426 -
Viun2g02871 780 Gene3D Phosphorylase Kinase; domain 1 466 569 - -
Viun2g02871 780 CDD EGF 276 308 - -
Viun2g02871 780 SMART serkin_6 492 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02871 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 571 776 - -
Viun2g02871 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 17 139 - -
Viun2g02871 780 CDD STKc_IRAK 498 770 - -
Viun2g02871 780 ProSitePatterns Protein kinases ATP-binding region signature. 498 523 IPR017441 GO:0005524
Viun2g02871 780 SMART blect_4 25 141 IPR001480 -
Viun2g02871 780 PIRSF SRK 1 780 IPR024171 GO:0004674
Viun2g02871 780 Pfam Protein kinase domain 495 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02871 780 Pfam S-locus glycoprotein domain 238 309 IPR000858 GO:0048544
Viun2g02871 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Viun2g02871 780 Gene3D - 22 140 IPR036426 -
Viun2g02871 780 Gene3D Transferase(Phosphotransferase) domain 1 571 774 - -
Viun2g02871 780 Pfam D-mannose binding lectin 70 156 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02871 Viun-Chr2 33141520 33144223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02871 482 779 Receptor kinase-like Gene Family AT5G03140 41.914 1.59e-67 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Viun2g02871 Pkinase 8.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02871 - - pvu:PHAVU_002G046100g 1352.04