Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02868 ATGTCTTTGCCTATCTTTCTCCCTTCCATTTTCATACTACTTTCACTTCTGAATGGATTCCATGCCATTGTACAACCAAACACCAGCATCACTGCTGGATCAAACTCTACATGGAAGTCACCCTCGGGTCATTTTGAATTTGGATTCCTCCATCTTCCCAGTGGTCTCTTTCTTTTGGGAATATGGTTTGCGAGAATCTCAGATATAACACTCGCATGGTACCTCTCTCCTCCTGTGGAACCAAATTCCCAAATCCAATTCACTTCTGCAGGAAACCTTGTGGTTGTACACCCAAATGGGACTACTGCTAACACCATATACGATTCAGAAGAAGGTGCTGCTGCAACTTCTGCTGACATGCAAGATGATGGCAATTTTGTCATCAAGGACTCCAAATTAGTATCTGTATGGCAGAGTTTCAACTATCCAACCAACACTATCTTACCGGGCCAAACATTGCTCAGTACTAAAACCCTCTATTCCAAGGGCAAAGGACCTTCAAACTACTCGTTGGGAAGTTTCCTATTACAAATGCAAGATGATGGCGACTGGGTGCTCAAAGCGTACCAGTGGTTAGACCCTGCATACTGGTACATTTCAACCATAACCTCCAATGTGACTTTGGTGTTTAATGCCACCACTGCTCTCATGTACCTTGTCGCCGGCACCGGGAACATCTACTCTATAACCAACACCACTCCAACCCCGGTGGAGGATTACTATCACCGTGCTACAATAGATGAGAATGGGAATTTCCAGCAATACGCTTATCACAAGAGGAATGGGACCGGTTGGAGGAGGGTTTGGAGAGCTGTGGAGGATCCCTGCAGAGTGAATGCTGTCTGTGGTGTGTATGGCTTGTGCAGTTCTCCTGACAATGAATCAGTAAAGTGTGAGTGTATTCCAGGTTATATCCCTTTCGATGATCGAGATATTTCAAAAGGGTGTCATCCACCAGCTGTCATAAATTACTGTGCAGAGAACAACTTCAAACTCCAGGTCTTTGACGACACTGATTTCCATTTTAATACTCATCTTGTTAGCTTAGCTGGTGTTGACTTCGAAAGTTGTAAGAAGGATGTAATAGATGATTGTAACATTGTTGCTGCAACTTATGACCATTCCACCTCCACATGTGCCAAGAAGAGACTGCCCTTACTGAATGCTAGAAATAGCTCTTCTTCAAAGGGACTGAAAGCACTGCTTAAGGTTGCTCACAGGATTGAATCTGGAACATATACTAAGAAGAAAATTTTTAATGTAAAAATCCTTTTAAAGGTTCTTGTTGCAGTTACTGCAACTCTTGCCTGTTTCTTTGGTGCCCTTGCTGTCTACTATCATCCTTTCACTCGGAAACTAACAATAAGAAAGAAGCATCTGAATGCAACAGCTATGGGAATCAACTTCAGAGAATTCACCTTTCAGGAGCTGTGTGAAGCAACAAAGGGATTTACTAAGATTCTTGGAAAGGGAGCTTCTGGCAGAGTCTATCGTGGTGCTCTAGTGATAGATGATGCAGAGATTGATGTTGCAGTAAAGAAACTGGAAAAGAAAATAGACAAAAGTGAGACTGAATTCACGACTGAGCTAAAAATTATTGGCCGTACTCATCATAGAAATTTGGTGAGGCTTTTGGGGTTTTGCATTGAGAGTAGCCATCGAATTCTTGTGTATGAGTTGATGCCACACGGTGCCCTCTCTAGTTATTTGTTTGGAGAGGGAGAAAGGCCTGAATGGGGTCAGAGGATTGAAATGGCTCTTGGAGTCGCAAGAGGGTTGCTATACTTGCACGAAGAGTGCAACACCCAAATCATACATTGTGACATAAAGCCCGAAAATGTGTTACTTGATGCCAATTACACACCAAAGATTGCAGATTTTGGACTGTCGAAGCTTTTGAACAAAGATCAAACTAGAACAAACACTAACTTAAGAGGAACGATGGGATACCTGGCACCTGAATGGCTAAGGAGTGCACCAGTAACTGCGAAAGTTGACATATACAGTTTTGGGGTTATGTTATTGGAGATTATTTGCTGCAGGAGGCACGTTGAGATTTGTGAGGATGGAAAAGACAGTGAAGATTATGATTTGGTTCTTTCAAATTTTGTTTTAAGGTGTGTGGTGTGTAGGCAACTAGAGGTAGTGGTGAGAGATGACACAGAAGTGCTGAATGATTTCAAGAGGTTTGAGGAAATGGCCTTGATTGGACTGTGGTGTGTTCATCCAAATCCTGCTTTAAGACCTTCAATGAAGCACGTAATGCAAATGCTAGATGGAACAGTGGAAGTTGGTGTTCCTCCTTTGGTTTATGAGCAGATCATGGCCTGTAGTTTATCACTGCAGTGCTAA 2352 0.4264 MSLPIFLPSIFILLSLLNGFHAIVQPNTSITAGSNSTWKSPSGHFEFGFLHLPSGLFLLGIWFARISDITLAWYLSPPVEPNSQIQFTSAGNLVVVHPNGTTANTIYDSEEGAAATSADMQDDGNFVIKDSKLVSVWQSFNYPTNTILPGQTLLSTKTLYSKGKGPSNYSLGSFLLQMQDDGDWVLKAYQWLDPAYWYISTITSNVTLVFNATTALMYLVAGTGNIYSITNTTPTPVEDYYHRATIDENGNFQQYAYHKRNGTGWRRVWRAVEDPCRVNAVCGVYGLCSSPDNESVKCECIPGYIPFDDRDISKGCHPPAVINYCAENNFKLQVFDDTDFHFNTHLVSLAGVDFESCKKDVIDDCNIVAATYDHSTSTCAKKRLPLLNARNSSSSKGLKALLKVAHRIESGTYTKKKIFNVKILLKVLVAVTATLACFFGALAVYYHPFTRKLTIRKKHLNATAMGINFREFTFQELCEATKGFTKILGKGASGRVYRGALVIDDAEIDVAVKKLEKKIDKSETEFTTELKIIGRTHHRNLVRLLGFCIESSHRILVYELMPHGALSSYLFGEGERPEWGQRIEMALGVARGLLYLHEECNTQIIHCDIKPENVLLDANYTPKIADFGLSKLLNKDQTRTNTNLRGTMGYLAPEWLRSAPVTAKVDIYSFGVMLLEIICCRRHVEICEDGKDSEDYDLVLSNFVLRCVVCRQLEVVVRDDTEVLNDFKRFEEMALIGLWCVHPNPALRPSMKHVMQMLDGTVEVGVPPLVYEQIMACSLSLQC 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02868 783 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 561 766 - -
Viun2g02868 783 Pfam Protein kinase domain 486 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02868 783 SUPERFAMILY Protein kinase-like (PK-like) 464 758 IPR011009 -
Viun2g02868 783 ProSiteProfiles Protein kinase domain profile. 482 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02868 783 Pfam S-locus glycoprotein domain 238 306 IPR000858 GO:0048544
Viun2g02868 783 ProSiteProfiles Bulb-type lectin domain profile. 21 141 IPR001480 -
Viun2g02868 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Viun2g02868 783 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 201 IPR036426 -
Viun2g02868 783 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 31 768 - -
Viun2g02868 783 Gene3D Transferase(Phosphotransferase) domain 1 561 764 - -
Viun2g02868 783 Gene3D - 18 142 IPR036426 -
Viun2g02868 783 Gene3D Phosphorylase Kinase; domain 1 455 560 - -
Viun2g02868 783 SMART serkin_6 482 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02868 783 ProSitePatterns Protein kinases ATP-binding region signature. 488 514 IPR017441 GO:0005524
Viun2g02868 783 Gene3D - 143 282 - -
Viun2g02868 783 PIRSF SRK 1 779 IPR024171 GO:0004674
Viun2g02868 783 Pfam D-mannose binding lectin 78 157 IPR001480 -
Viun2g02868 783 CDD STKc_IRAK 488 760 - -
Viun2g02868 783 SMART blect_4 29 143 IPR001480 -
Viun2g02868 783 FunFam S-receptor-like serine/threonine-protein kinase 451 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02868 Viun-Chr2 33128909 33131320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02868 415 781 Receptor kinase-like Gene Family AT5G55830 36.412 2.45e-64 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Viun2g02868 Pkinase 3.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02868 - - gmx:102662509 1181.01