Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02860 ATGGAATCAGGCGTGAGATCGAGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGATTGGGTGCTACTGCTTCCACGTCTCGGAAGCTCTATGAATCCAAGAAAAGGGCCAACATCAGCGTTTCGCTGAGTGATTCTGGATCAAGCGACGAGCTGCTGATTCCTCCTGGTAGAAGGCTTGGTCCTGAGACAATTCGAGTTTGCAATGGTTTGGCTGCCTCTGAGCGGGGTGGGAATGAAGTTAGTCGGAAAAGGGACAGAGTGGAACGAATTAGGGGTAGTGGGGAAGGTATTGCTGCAGAGAAAGGTTTGGAGGCGAGGGAAAGGAAGCGTAGTAAGTTGGATGTGTATGATTTTGATGAATATGATGGAATGGGTGCGGAAAACTCAAGGAGGAGGCATTTAGATGATAATGGAGTTGGTCACGGAGGAGGAAGGTTTATAGGATCAGGGCATGCTGCTAGAAGTGGAATTGATAGGGAATTCAAAGCAGGCTCAAGTGGACGAGTTCTCGATAAGAGAAAGAACTCCTATGGTGACAGGCCTAGTGGCTTGTTTCCAGTGGATGATATTGATCACAGTAGGTTCAAGATGAACAGGGATGGTACTCGGGTACCTGTATCCCCGCAGAAGGAGAAGTTTAATTCAGATGAGTCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGCGTGGGCCATCAGAACAGTATTATGATCATCACAAGCCTGTAGAAAGCAGGCAAAGGTTAAAAACTGAAGAGCCTACCAAGAGGATAAAGTCTGAAGAGACTGTTAAGAGGAATGTTCCAAGTCGTCCTTCATCATACATGGAAACAAAACCTGTTGAGAAACCAAGATTAGTCAAGAGACCAGAAAAGAAACGGATAACGTCCAAAAAATCCTTGTCAAGCAAGGACAGTAGGGGTGATGATGAGGGGGATTCGGATAACAGTGACGCATCACTGAATCCTGGAATAAGAAATACTGAAACTCATAAGCCTGCCAAAAAAGTAATCTCGGAGGATGAGCAGACACCTGTGCACGAAAAACTCCCCACCACAGGAACAAAAGATGGGAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGAGAGCGAATAAGGGAGATGCTGCTGACTTCAGGTTGGACTATAGACTATAGACCTCGAAGGAACAGAGACTACCTGGATGCAGTCTACATTAACCCAGCAGGTACAGCCTATTGGTCCATCATCAAGGCCTATGATGCGCTTCAAAAGCAATTGAATGATGATGCTAATGAGGTCAAGGTCAAAGGGGATAGTTCTTCTTTTGCTCCTATTGCAGATGAGGTGCTCAGTCAGCTAACAAGGAAAACTAGAAAGAAAATGGAGAAAGAAATGAAAAAGAAGAAGAAAAAATATGATAGTGAAAGTGGTAATGAAAAAGAGCCTCAAAGAAAAAGATCTGCCAGCAACAAGTGTGATATGAATAGCACGGATAGTGACAGCAATGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGTCCGAAAATACCATTACCAGTGCTCGCACAAAAATCCAGAATGCTACCCATCACTCAAGTGATGGAATAGAAAAATCGTCATTTGGAGGTGATCCTCATATACACGGACGGAAGAGTAAAAAACATGGAAGATGTACCTTGTTAGTTCGCAGTTCGAACAAAGGATCAAATTCGGAATCTGATGGCTTTGTCCCATATGTGGGGAAAAGGACAGTTCTTGCCTGGTTAATTGACTCTGGAACTGTAGAGCTAAGCCAAAAGGTTCAGTACCGCAGACGGAAAAAGGTCCTGCTGGAGGGGTGGATCACAAGGGATGGCATTCATTGTGGCTGCTGCAGTAAGATCCTTACCGTTTCAAAGTTTGAACTTCATGCAGGAAGCAAATTGCCACAACCATATCAAAATATATATTTGGAATCCGGTGTCTCTCTTCTACAATGCCAAATAAATGCATGGAATAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTCAGTGGATATTGATGGTAATGATCCAAACGATGATACATGTGGAATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATCCAAATGCTTCCTCCCGGTGAATGGCATTGTACAAATTGCACCTGTAAATTTTGTGGCATAGCGACTAGGACTTCTGAAAAAGATGATGCATCTGTGTATGTCCTACGGACATGCAACTTATGTGAGAAAAAATATCATGACTCTTGCTCTGAGGAGATGGATACCCATCCTAATAACTTGAATACTTCAAGCCTTTCTTTCTGTGGGAAAGAGTGTAAAGAGCTTTCTGAACACTTAAAGAAATACCTTGGTACCAAGCATGAACTAGAAGGGGGGTTTTCATGGTCTCTCATTCATAGAACAGATGAAGACTCAGAGGCAGCTTGCAGGGGAATTACCCAGAGAATAGAATGCAATTCAAAGTTGGCTATTGGGCTAGCTGTGATGGATGAATGCTTTTTACCTGTTATTGATAGGAGAAGTGGGATCAATATAATCCGCAACGTCTTATATAATACTGGATCAAACTTTAGCCGGTTGAGCTATGGTGGATTTTACGCTGCTATTTTGGAAAAAGGGGATGAAATAATTGCTGCAGCATCTATCAGGTTGCATGGAACTAAGGTAGCAGAGATGCCATTTATTGGAACTCGACATGTATATAGGCGCCAGGGGATGTGCCGCCGGCTCTTTTCTGCCATTGAATCGGCCCTTTGCACTCTGAAAGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTCACACATACATGGACAACGGTTTTTGGCTTCACACGTCTAGACAGTTCACTCAGGCAAGAGATGAAGTCACTTAATATGATGGTCTTCCCTGGTATAGATATGTTACAGAAGCGGTTGGTTGAACAAGGAAAACATGAAGGTTCTGAGAAAATGGGAAATGAAGACAATGATTTTATCCATACGAAAATGGGAAATGGGTCAGATGTGGGTTCTTTAACTCCACAAAATCGTCATAGAAGTGATGATACTAGTTCAAATCCTGCTAATGAGACGAATGATGAATGCAGCGATGCTTCTCAAGAACTTAACAATGAAGTTTTGGTTGATGGAACTCTCAGCTCTAAATCTGATTCCGAGGAAATGGTGTCTGATTCAGTTTCAGATAAATGTATTTCTCCTTCTAGGACTAGTCACAGTGCACCAGAAATGAAGAATAAAGTGGATGCTGCTTCTCCTGTTGATAAATTAAATCCTCCTTCAAAATGCCAATCCATTTCTCCTAATGACACATCTGTGAGTAGTCACTCAGAAGATATTCCAAATGTTAAAGCTTTGGTTCAGGAAACTTCTTCGTCTGATCCATGTTCACAAGAAAACCTTGACAAGAAATGTCACTCATTCTCTGCTATGAACTGTGATTCGTCAGAGCTCGACATTAATCCGGTGGTGGGTTCTCCAAAGGCAGCCGATACTTCACCTACTAAAGAGGTTCGTATGGATGACGACGCTCTTGATGCTGTTTCTTCAAGGAATTTATTGGAAGAGAATATTAGAAAGGGGAATGATCAAAATCTAGATGTCTCCGGTTCTGCTCTCAAACTTGGTGATAAGAGTTTGTTGCAGGAAGGATCTGATTCCAAAAATGAAATTGAATGTGAAAATGAGAAGGATGTATGTGCTGTAAACGCTTCTGGTGTTAGTTCTGATACTGTTGTGGTCTAG 3873 0.4224 MESGVRSSGSGVVVKSRNSSGCLIVRKKGDGLGATASTSRKLYESKKRANISVSLSDSGSSDELLIPPGRRLGPETIRVCNGLAASERGGNEVSRKRDRVERIRGSGEGIAAEKGLEARERKRSKLDVYDFDEYDGMGAENSRRRHLDDNGVGHGGGRFIGSGHAARSGIDREFKAGSSGRVLDKRKNSYGDRPSGLFPVDDIDHSRFKMNRDGTRVPVSPQKEKFNSDESIRVQGKNGVLKVMVNKKKVRGPSEQYYDHHKPVESRQRLKTEEPTKRIKSEETVKRNVPSRPSSYMETKPVEKPRLVKRPEKKRITSKKSLSSKDSRGDDEGDSDNSDASLNPGIRNTETHKPAKKVISEDEQTPVHEKLPTTGTKDGKIKRGSGTEKQKLRERIREMLLTSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDANEVKVKGDSSSFAPIADEVLSQLTRKTRKKMEKEMKKKKKKYDSESGNEKEPQRKRSASNKCDMNSTDSDSNEEKLSSFIKQGSKSMKNKMSENTITSARTKIQNATHHSSDGIEKSSFGGDPHIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYVGKRTVLAWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQINAWNRQEHSEKIGFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCTNCTCKFCGIATRTSEKDDASVYVLRTCNLCEKKYHDSCSEEMDTHPNNLNTSSLSFCGKECKELSEHLKKYLGTKHELEGGFSWSLIHRTDEDSEAACRGITQRIECNSKLAIGLAVMDECFLPVIDRRSGINIIRNVLYNTGSNFSRLSYGGFYAAILEKGDEIIAAASIRLHGTKVAEMPFIGTRHVYRRQGMCRRLFSAIESALCTLKVEKLVIPAIAELTHTWTTVFGFTRLDSSLRQEMKSLNMMVFPGIDMLQKRLVEQGKHEGSEKMGNEDNDFIHTKMGNGSDVGSLTPQNRHRSDDTSSNPANETNDECSDASQELNNEVLVDGTLSSKSDSEEMVSDSVSDKCISPSRTSHSAPEMKNKVDAASPVDKLNPPSKCQSISPNDTSVSSHSEDIPNVKALVQETSSSDPCSQENLDKKCHSFSAMNCDSSELDINPVVGSPKAADTSPTKEVRMDDDALDAVSSRNLLEENIRKGNDQNLDVSGSALKLGDKSLLQEGSDSKNEIECENEKDVCAVNASGVSSDTVVV 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02860 1290 MobiDBLite consensus disorder prediction 1019 1075 - -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 198 212 - -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 553 580 - -
Viun2g02860 1290 ProSiteProfiles Zinc finger PHD-type profile. 714 759 IPR019787 -
Viun2g02860 1290 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 903 973 IPR016181 -
Viun2g02860 1290 CDD NAT_SF 912 971 - -
Viun2g02860 1290 Pfam Tify domain binding domain 639 689 IPR032308 -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 1134 1154 - -
Viun2g02860 1290 Pfam PHD-finger 717 759 IPR019787 -
Viun2g02860 1290 SUPERFAMILY FYVE/PHD zinc finger 702 759 IPR011011 -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 1043 1075 - -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 248 287 - -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 485 506 - -
Viun2g02860 1290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 815 IPR013083 -
Viun2g02860 1290 SMART PHD_3 716 757 IPR001965 -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 472 538 - -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 350 390 - -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 1019 1034 - -
Viun2g02860 1290 Coils Coil 469 496 - -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 507 538 - -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 1090 1154 - -
Viun2g02860 1290 CDD PHD4_NSD 717 756 - -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 183 390 - -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 1090 1117 - -
Viun2g02860 1290 ProSitePatterns Zinc finger PHD-type signature. 717 756 IPR019786 -
Viun2g02860 1290 MobiDBLite consensus disorder prediction 317 335 - -
Viun2g02860 1290 PANTHER PHD FINGER PROTEIN 12 373 1191 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02860 Viun-Chr2 33084455 33092077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02860 1 1017 PHD Transcription Factor Family AT4G14920 49.568 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun2g02860 TDBD 7.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02860 - - ccaj:109804483 2018.43