Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02859 ATGGAATCGGAAGTGAGATCGGGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAATTCCTCGGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGGTTGGGGGCTACTGCTTCCACGTCTAGGAAGCTCTATGAATCGAAGAAAAGGGCCAACATCAGTGTGTCTGTGAGTGATTCTGGATCAAGTGACGAGTTGCTGATTCCTCCTGGTAGAAGGCTCGGGTCTGAGACTATTCGTGGTTGCAATGGTTTGGCTGGCTCTGAGCGGGGTGGGAGTGAAATTAGTCGAAAGAGGGACAGAATGGAAAGGATTAGGGGTGCGGATAAAGGATTGGAGCAGTGGGTTACTAAGCGAAGTAAGTTGGATGCGTACAATGTCGAAGAATATGATGGTATGGATGTGGAGATCACGAGGAGGAGGCATTTGGATGGCAATGGAGTTGGTTTTGGAGGAAGAAGTTTTATGGGATCGGAGCATGCTACTAGGAGTGGCATTGATAGGGAATTAAAAAATGGGTCAAGTGTACGTCTTCCTGATAAGCGAAATAACTCTTATGTTGACAGGCCAAGTGGCGTGTTTCCTGGAGATCATGTTGGTCACATTAGGCTCAAGAGTAACAGAGACGGCGTTCGGGTACCTATACCCTTGCAGAGGGAGAAATTTAATTCCGAGGAGTCTATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTATGTGGGCAATCAAAACAATATTACGATCATCACAAACCTGTGGAAAGCGGGCGAAGGTTGGAAACTGAAGAGCCCTCCAAGAGGATGAAGACTGAAGAGACTGCCAAGTGGAATGTTCCAACTCGTCCTTCATCATACTTGGAAACAAAACCTGTTGAGAAACCAGGATTACTCAAGAGGCCGGAGAAGAAACAGATAGCATCAAGAAAATCTTTGTCAAGCAAGGATAGCAAGGGTGATGAAGGGGATTCAGATAACAGTGACACATCATTGAATCCCGGGGTAAGAAATGTTGAAGCTGCTAAGCCTGTAAAAAAGATGTTGTCCGAGGATGAACAGACCCCTGTGCATGATAAACTCTCAACTACAAAAGCGAAAGAAGGAAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGAGAGCGAATAAGGGAGATGCTGCTGACTTCGGGTTGGACCATTGACTATAGACCTCGAAGGAACAGAGACTACCTGGATGCAGTTTATATTAATCCGGTAGGTACAGCCTATTGGTCTATCATCAAGGCCTATGATGCGCTTCAAAAGCAATTGAATGAAGATGCTAAGGAGGTCAAGGTCAAAGGGGATAGTTCTTCTTTTGCTCCTATTGCAGATGAGGTGCTCAGTCAACTAACAAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGAAAAACAAGAAGAAAAAATATGATAGTGAAAGTGATAATGAAAAAGAGCCTCAAATAAGATCTGCCAGCAACAAGCATGATATGAATAGCACTGATAGTGATAACAATGAGGAGAAATTAAGCTCCTTTATAAAACAGGGAAGTAAGTCGATGAAAAATAAAATGTTTGATACTAACGTTATCAGTGCTCGGTCTAAAATCCAGAATGCTACCCATCACTCAGTTGAAGGAATAGAAAAACCATCTGGATGTGATCCTCGTATACATGGACGGAAGAGTAATAAGCACGGAAGATGTACCTTGTTAGTTCGCAGTTCTAACGAAAGATCAAATTCAGAATCTGATGGCTTTGTCCCATATATGGGAAAACGGACAGTTCTTGCCTGGTTGATTGACTCGGGAGCAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAGAAAGTCTTGCTTGAGGGGTGGATCACAAGAGATGGTATACATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTACCACAGCCATATCAAAATATTTTTTTGGAATCTGGAGTTTCTCTTCTACAGTGCCAAATAGATGCATGGAATAGACAAGAGAATTCTGAAAAAATTGGTTTCCATTCTGTAGATATTAATGGTGATGATCCAAATGATGATACTTGTGGTATCTGTGCTGATGGAGGGGATTTAATCTGTTGTGATAGTTGTCCATCAACATTTCATCAGAGCTGCTTGAATATACAGAAGCTTCCTCTTGGAGAATGGAATTGTCCAAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGGACTTTCTGAAAAAGATGATGCATCAGTGCCTATCGTACATACCTGCAACTTATGTGAGAAAAAATATCATGACTCTTGCGCTAAGGAGATGGATACCCTTCCTAATAACCTCAATACATCAGGCCTTTCTTTTTGTGGGAGAGAGTGCAGAGAGCTTTCTGAACAATTGAAGAAGTATCTCGGTACCAAGCATGAACTAGAAGCGGGTTTTTCGTGGTCTCTCATTCATAGAACAGATGAAGACTCAGACGCATCTTGCAGAGGAATTACTCAGAAGGTAGAATGCAATTCAAAGTTGGCTATTGCGCTGACTGTGATGAATGAATGCTTTTTACCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCGTAACATTTTATATAATAGTGGATCAAACTTTAATCGGTTGAACTATGGTGGCTTTTACACTGCTATCTTGGAGAGAGGGGATGAAATCATTGCTGCAGCATCTATCAGGTTCCACGGAACTAAGATAGCTGAGATGCCATTCATTGGAACTCGTCATATATATAGGCGTCAAGGGATGTGTCGCCGGCTTTTCTCTTCCATTGAATTGGCCCTTTGCTCTATGAAGGTCGAAAAACTAGTTATTCCTGCAATTGCTGAACTAACGCATACATGGACAACAGTTTTTGGCTTCACACATCTGGACTACTCACTCAGGCAAGAAATGAGGTCACTGAATATGGTGGTCTTCCCTGGTATTGATATGTCACAGAAGCTGTTAATGGAAGGTTCTGAGAAAATGGGACATGGAGACACAGATTTTATTCACACCAAAATGGGAAATAGGTCAGATATGGGTTCTTCAACTCCTCAAGATCCTCGTGGAAGTGATGATGTTAGTTCAAATCCTGTTAATGATACGAATGATGAATGCAGCGATGCTTCTCAAAAGCTAGACCAAGTTTTGGTCGATGGGATTCTCTGTTCGAAATCTCATTCTGAGGAAATGGTGTCAGATTCAGTTTCAGATAAATGTGTTTCTCCTTCTAGAACAAGTCACAGTGCACTAAAAATGAAGAATAAAGTGGCGGTTGCTCCTCCTGTTGATAAATTAAATCCCACTTCCGTGAGAAATCACCCAGAAGATATTCCAAATGATCAAGCTTTGGTTCAGGAAACTGCTTGTTCTGATCCATGTTCAGCAGAAAATCTTGACAACAAATGTCACTCGTTCACTGCTATGAATTTTGATTCGTTGGAGGTTGACGTTAGTCCAATTTTGAATTCTCAAAAGTCAGATAATACTCCACCTACTAAAGAAGCTTATGTGAATGACGCTCTTGAAACTGTTACTTCAGGGATTTTATCAGAAGAGAATATTATTCCAAAGCGAAGTAATCAAGATGTAGATGTCTCCATTTCTTCTCTGAATCATGCCGATGAGAGTTTGTTGCAGCTGGGATCTGGTTCCAACAATGAATTTGGATGTGAAAATGGGAAGGATTTGCTTTTGAACCGAATAGTTGCTTCAAATGAAACACGTCTTGATGAAAATGGCTTAAATGCTTCCGATGATAGTTCCGAGACTGTTGTGGTCTAA 3840 0.4161 MESEVRSGGSGVVVKSRNSSGCLIVRKKGDGLGATASTSRKLYESKKRANISVSVSDSGSSDELLIPPGRRLGSETIRGCNGLAGSERGGSEISRKRDRMERIRGADKGLEQWVTKRSKLDAYNVEEYDGMDVEITRRRHLDGNGVGFGGRSFMGSEHATRSGIDRELKNGSSVRLPDKRNNSYVDRPSGVFPGDHVGHIRLKSNRDGVRVPIPLQREKFNSEESIRVQGKNGVLKVMVNKKKVCGQSKQYYDHHKPVESGRRLETEEPSKRMKTEETAKWNVPTRPSSYLETKPVEKPGLLKRPEKKQIASRKSLSSKDSKGDEGDSDNSDTSLNPGVRNVEAAKPVKKMLSEDEQTPVHDKLSTTKAKEGKIKRGSGTEKQKLRERIREMLLTSGWTIDYRPRRNRDYLDAVYINPVGTAYWSIIKAYDALQKQLNEDAKEVKVKGDSSSFAPIADEVLSQLTRKTRKKMEKELKNKKKKYDSESDNEKEPQIRSASNKHDMNSTDSDNNEEKLSSFIKQGSKSMKNKMFDTNVISARSKIQNATHHSVEGIEKPSGCDPRIHGRKSNKHGRCTLLVRSSNERSNSESDGFVPYMGKRTVLAWLIDSGAVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIFLESGVSLLQCQIDAWNRQENSEKIGFHSVDINGDDPNDDTCGICADGGDLICCDSCPSTFHQSCLNIQKLPLGEWNCPNCTCKFCGIASGLSEKDDASVPIVHTCNLCEKKYHDSCAKEMDTLPNNLNTSGLSFCGRECRELSEQLKKYLGTKHELEAGFSWSLIHRTDEDSDASCRGITQKVECNSKLAIALTVMNECFLPVIDRRSGINLIRNILYNSGSNFNRLNYGGFYTAILERGDEIIAAASIRFHGTKIAEMPFIGTRHIYRRQGMCRRLFSSIELALCSMKVEKLVIPAIAELTHTWTTVFGFTHLDYSLRQEMRSLNMVVFPGIDMSQKLLMEGSEKMGHGDTDFIHTKMGNRSDMGSSTPQDPRGSDDVSSNPVNDTNDECSDASQKLDQVLVDGILCSKSHSEEMVSDSVSDKCVSPSRTSHSALKMKNKVAVAPPVDKLNPTSVRNHPEDIPNDQALVQETACSDPCSAENLDNKCHSFTAMNFDSLEVDVSPILNSQKSDNTPPTKEAYVNDALETVTSGILSEENIIPKRSNQDVDVSISSLNHADESLLQLGSGSNNEFGCENGKDLLLNRIVASNETRLDENGLNASDDSSETVVV 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02859 1279 MobiDBLite consensus disorder prediction 347 383 - -
Viun2g02859 1279 MobiDBLite consensus disorder prediction 1020 1062 - -
Viun2g02859 1279 Coils Coil 462 489 - -
Viun2g02859 1279 ProSiteProfiles Zinc finger PHD-type profile. 705 750 IPR019787 -
Viun2g02859 1279 MobiDBLite consensus disorder prediction 499 517 - -
Viun2g02859 1279 SUPERFAMILY FYVE/PHD zinc finger 697 753 IPR011011 -
Viun2g02859 1279 MobiDBLite consensus disorder prediction 297 329 - -
Viun2g02859 1279 Pfam PHD-finger 708 750 IPR019787 -
Viun2g02859 1279 MobiDBLite consensus disorder prediction 469 498 - -
Viun2g02859 1279 MobiDBLite consensus disorder prediction 469 517 - -
Viun2g02859 1279 MobiDBLite consensus disorder prediction 248 279 - -
Viun2g02859 1279 PANTHER PHD FINGER PROTEIN 12 326 1149 IPR042163 GO:0003714|GO:0045892
Viun2g02859 1279 SMART PHD_3 707 748 IPR001965 -
Viun2g02859 1279 CDD PHD2_CHD_II 708 747 - -
Viun2g02859 1279 MobiDBLite consensus disorder prediction 76 97 - -
Viun2g02859 1279 MobiDBLite consensus disorder prediction 248 383 - -
Viun2g02859 1279 MobiDBLite consensus disorder prediction 547 567 - -
Viun2g02859 1279 MobiDBLite consensus disorder prediction 1028 1062 - -
Viun2g02859 1279 Pfam Tify domain binding domain 630 680 IPR032308 -
Viun2g02859 1279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 802 IPR013083 -
Viun2g02859 1279 ProSitePatterns Zinc finger PHD-type signature. 708 747 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02859 Viun-Chr2 33076294 33082089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02859 6 1008 PHD Transcription Factor Family AT4G14920 49.370 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun2g02859 TDBD 5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02859 - - gmx:102666194 1960.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02859 2 33076294 33082089 Viun2g02859 2 33076294 33082089 ECH