Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02841 ATGGACACCCCAGAGAGGAACCAGATCAGTGCTACCCTCTCCAAGTTTGAGGATTCACCTGTTTTCAATTATATCAACAGTTTGTCTCCTATAAAGCCCGTTAAGTCTGTTCCCATTAGTCAGACTTTCAATTCACTGAGCTTTTCGTCACCTCCTTCCGTTTTCACATCACCCCACGTCAGCTGTCTCAAGGAATCTAGATTTCTCAGAAGACATATCCCATTGGGCACATCAAAGCCTAAGATTTCTTCTGAAGATGTAAATAAAGTTCACACAATTGAAGAGGCTCTTGCAGATTCTAAACGTGCGCGTCATAACAAGGGTGAATCACAGAACACTGAAAAAGGGATTTCTCTTGGAGATGCTTCAATTGAGCACATAAAATTCTCAGTTGAACCACAGCAAACTTTAAAGTATGACACTTGCGGTAGCCCCGGCTATGATGAGGATAACACTCTTTTGGAATTGCCCGGTGAGGCAGCAGCAGCAGGTGCTTGTAAAACTGATTCAGTTGAGAGTGAAGTGCATCTTCAGGAAATGTGTCAGATGGAGCCAAAGAGTGAAGATCCAGACTGTTATTGGGATAGTTTAATTCCTGATGGCTCTGATATGCTAATTTTTAATTCCCCAGGTGAAGCAGAAGCTTTTAAGGGTCTGATGCACAAACCGTTGGATCCTTCTATACGACTGAGCGATTTTATGTCTGTGGTGCCACTTTCTGCCGTCCATAATGGTAGGAAAATGTTCATTGTTGATTCGGTTGCTTCAGGTTCTGAACATGAGATTGGAGATCACTGTTCTGAGCCAACGATAACAGCCACGGACACGGATCAAACACGGGAGAATCTTGCCGATGTTGTTTTGGTGACTAGCAATTATAACGAGAACGCAAATGATCAGCTTGTTTCTGTCACGCACCGTGCCATAAGGAGGCGTTGTCTGGACTTTGAGATGGCCAATGTGCAAAAGAAGAACTCTGATGATAATTCAAACGCCGGTTCAAGTACATCAGAGTCCGATGAGAGGAATGTTGCCAATGAAAAGCAACTTCTTCCAGCAAAACTCAATGGGAATTTTCAGAGGGGAATTTTGCAGGGAATTGGTCTACACCTGAATGCACTTGCTGCCTTGAAAGAATACAAGGGCATACAAATTGAAAATTTGTCTTCTGGAAGACAACTCAGCCTGCCCAACTCTACTTCTTTGCAAATCTCTACAACCCAAGAACAGCAGCATCTTTCAATGGTACCTGTTTCATCTGAAAGAGAATTGGATTCGTCGGACAATGGGGTTCAGCCTACCGAAGATTGTTCCCAGCCATCGGTTTACATGACTGGTGAAGACTTCAATAGGAATAGTCCCAGAAAGAAAAAACGTAAGATGGAGACACCTGGCGAAACTGAGGGTTGTAAGCGCTGCAACTGCAAGAAGTCGAAGTGTTTGAAGCTTTACTGCGAGTGTTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTGTTCATGAAGACACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGCAACCCTCTTGCATTTGCTCCAAAAGTCATCAGAAGTGCTGATTCTGTTCCTGAAATTGGGGATGATCCAAATAAAACTCCGGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAAAAATCCAGCTGCCTAAAGAAATACTGTGAATGTTATCAGGGTGGTGTCGGTTGCTCCATTGGCTGTAGATGTGAAGGGTGCAAGAATGCTTTTGGCAGAAAAGATGGTTCTGCTCCTGTAGGCATAGAAACTGAGCAAGAAGAAACGGAAGCAAGTGACAAGGGTGTGGCAGAAAAAGCTTCACAGAAAACTGAAATTCAGAACACCGAAGAGCATCTGGATTCTGCTACTGTATCAACACCATTACGACTTTCCAGGCCTTTGCTTCCGTTGCCCTTTTCATCAAAGGGAAAAGCACCAAGATCCTTTGTTACCACCATCTCAGGCTCTGCATTGTTTGGCAGCCAAAAGCTTGGGAAGCCAAACTCTCTTTGGCCTCAATCTAAGCATTTTCAAACTGTCCCAGATGATGAAATGCCAGAGATTCTCCTAGGTGATACCTCTCCGGTCACATGCATCAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCCAGCTGTGACTTGGGATCATCTCCTAGTCGCAGAGGTGGCAGGAAGTTGATATTACAGTCCATTCCTTCATTTCCTTCTCTCACCCCTCACCCTTAG 2280 0.4443 MDTPERNQISATLSKFEDSPVFNYINSLSPIKPVKSVPISQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHIPLGTSKPKISSEDVNKVHTIEEALADSKRARHNKGESQNTEKGISLGDASIEHIKFSVEPQQTLKYDTCGSPGYDEDNTLLELPGEAAAAGACKTDSVESEVHLQEMCQMEPKSEDPDCYWDSLIPDGSDMLIFNSPGEAEAFKGLMHKPLDPSIRLSDFMSVVPLSAVHNGRKMFIVDSVASGSEHEIGDHCSEPTITATDTDQTRENLADVVLVTSNYNENANDQLVSVTHRAIRRRCLDFEMANVQKKNSDDNSNAGSSTSESDERNVANEKQLLPAKLNGNFQRGILQGIGLHLNALAALKEYKGIQIENLSSGRQLSLPNSTSLQISTTQEQQHLSMVPVSSERELDSSDNGVQPTEDCSQPSVYMTGEDFNRNSPRKKKRKMETPGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPVHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSIGCRCEGCKNAFGRKDGSAPVGIETEQEETEASDKGVAEKASQKTEIQNTEEHLDSATVSTPLRLSRPLLPLPFSSKGKAPRSFVTTISGSALFGSQKLGKPNSLWPQSKHFQTVPDDEMPEILLGDTSPVTCIKTSSPNGKRISSPSCDLGSSPSRRGGRKLILQSIPSFPSLTPHP 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02841 759 MobiDBLite consensus disorder prediction 716 759 - -
Viun2g02841 759 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 557 592 IPR005172 -
Viun2g02841 759 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 471 506 IPR005172 -
Viun2g02841 759 MobiDBLite consensus disorder prediction 97 111 - -
Viun2g02841 759 MobiDBLite consensus disorder prediction 320 344 - -
Viun2g02841 759 ProSiteProfiles CRC domain profile. 469 594 IPR005172 -
Viun2g02841 759 MobiDBLite consensus disorder prediction 716 734 - -
Viun2g02841 759 MobiDBLite consensus disorder prediction 450 470 - -
Viun2g02841 759 SMART CXC_2 554 595 IPR033467 -
Viun2g02841 759 SMART CXC_2 468 509 IPR033467 -
Viun2g02841 759 MobiDBLite consensus disorder prediction 423 470 - -
Viun2g02841 759 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 758 IPR044522 GO:0003700
Viun2g02841 759 MobiDBLite consensus disorder prediction 97 117 - -
Viun2g02841 759 MobiDBLite consensus disorder prediction 423 448 - -
Viun2g02841 759 MobiDBLite consensus disorder prediction 323 340 - -
Viun2g02841 759 MobiDBLite consensus disorder prediction 259 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02841 Viun-Chr2 32985922 32990862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02841 16 758 CPP Transcription Factor Family AT4G14770 44.372 5.86e-165 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Viun2g02841 TCR 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02841 - - gmx:100815907 1267.68