Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02827 ATGAGTATTGCTGGGTGGTCAGATGAGGAACGCTCTGTCATTGGAGATAAAGCAGAAATTGGGTTTCTAGATTTTGAGGAAGAGAAATCTGTGTGCAGTTACGTTGATTATGAAGGGGTTCCTGTTGTTGTATCTGCCCCATTTCCATTTGTGGATGGCAAGCCTCAATCTGTATTTGTAGGGGACACTGCTGTGGATTTAATAACCGTTAGGAATACTACTGATGAACCAGTTGATCTGTGGAGTGTTCATATTTTTGCCTCAAATCCTACGGACAGTTTCACTCTTTCTCTTACGGAACCTCCACCGGAAAATTCAAATGCAGACGGAGAGCAGAGCTGCTTAGAATCTTTCACTTTGGAGGACAGGATGCTTCAACCCCGTGAAAACTTGAAAATATGGCTGTCTTGCAAGACAAAAGAAATTGGCATGTATTCATCAGTTGTATATTTTGATGCTGGAGATGAAAAAATTGAAAGGGTGGTTTTCCTCTTAGTTGAAGACAAAATCTCCAAGTCTTTGGCTTCTAAGAGGCCCTATTCAAGAGCAAAGAAAAAAGACAAATTTGTTGTCGATACTTATGTTGCAGGTTCACGTCCTGCAGCGAAGCCAACTCGAAGATACATAAATAGGCTTCCAAGATATGAAATTCCCCGGAACATGAGAGAGCTGCTTGAGAGTAATCAAATCCCTCAAGTTGTTGAAGAAGGTCTTACAAGGAGGACTTATTCATCTTATTTCAAAACATTAATAATAATGGAAGAGATTCAATTGGAGGAAGACATGAGGATTTATGATATGGAATCCATATCGATGAGAAAGAGGAACAATCAGTTTTTGTCTATGGAGGTTCCTGGACTTGCTGAGAGAAGACCATCGCTGGTTCATGGGGATTATATCTTTGTTAAGCTCGCATGTCAACGTGATAATAGCAACAGACAGGTTTATCAGGGCTTTATCCACCGAGTTGAAGCTGATGAGATTTATTTGAAGTTTACTCCTGAATTTCACTATTACCACAAGGACGAAAATATATATGATGTTCACTTCACCTATAACAGGATCAATATGAGAAGGCTATATCAAGCAGCTGAGGCAGCAGAAAACTTGGGTACCGACTTCCTTTTTCCATCTACATCAAAAAAGAGACACATTAAAACTACTGCTCTAGTACCCATATCTGGCACTTTTAACGAGGAGCAAATTTGTTCAATCAAAATGATTCTTGGTTGCAAAGGTGCACCGCCTTATTTGATTCATGGACCCCCTGGTACGGGAAAGACAAGGACAATAGTAGAAGCAATCCTGCAGCTCTACAAATATCACAAGAATACTCGGATTCTTGTGTGTGCACCCTCAAATAGTGCAGCAGACTACATACTGGAGAGACTCCTTGCTCAACAGGACATTGAGTTGCGAGAAACTGAAATATTCAGGCTCAATGCATCTACCAGGCCATACGAGGATGTTAAACCTGAAGTTATCCGCTTCTGCTTCTTTGATGATATGGTATTCAAGTGTCCCCCAGTGAACGCCCTCAGTTATTATAGGATCATAATATCCACATATATGAGTGCGTCTCTTCTTTTTGCTGAAGATGTTGCCCGTGGTCACTTTTCCCATATATTTTTGGACGAGGCTGGCCAAGCTTCTGAACCTGAAACCTTGATCCCTGTATCCCACCTCTGCACAATGAAAACTGTTGTTGTTCTGGCTGGAGATCAATTGCAATTGGGTCCAGTAATATATTCCAAGAAAGCAGATGAGTATGGCTTGGGGGTTTCATATATGGAACGATTGTCTGAACTCCCGCTATATGCCAGTGGAGATACAAATTATGTAACACGATTGATTCGGAACTATCGATGTCACCCAGCAATTTTACATCTTCCTTCGAAGTTGTTCTATTGTGGGGAATTGATTGCCTGTAGAGATTCCTCAACTTTCGTGACGATAGGGGAGTTGCTACCTAATAAGGAATTCCCTATTCTTTTCTATGGCATTCAAGGATGCGATGAAAGAGAAGGAAATAACCCTTCATGGTTCAACCGCATTGAAGCTAGTAAGGTTATAGAAGTTGTCAGGAGACTGATAGCAGGAGGGAACATAAAGGAGGAAAACATTGGCATAATAACTCCATATAGGCAACAAGTGTCAAAAATAAAACAAACACTTGAAAATCTAGATATGCCTGATATCAAAGTGGGCAGTGTCGAGCAATTCCAAGGACAAGAGATGGAGGTTATTATCATATCAACAGTTCGATCAACTATCAAACATAACGAGTTTGACAGAGTCCACTGTCTTGGCTTTTTGAGCAATTATAGAAGGTTTAACGTGGCTATAACTCGTGCTATATCATTGCTGGTTATAATTGGGAATCCGCATATAATCTGCAAGGATGACCATTGGAGCCAAATGTTGTGGTACTGTGTGGACAATTCATCTTACCAGGGATGTTCTCTTCCTGAAAGAGTGGAACCTTATGACGATGAGGACACCGGAGAGAACCCATACTTGACTGAAGATAATGCAGAATGGGGTCAAGATTCAACAAACAATGCAGAATGGGGTCAAGATTCAACTAACAATGCAGAATGGGGCCAAGATTCATCTCAGATAGGGCTCCCAAATCCTGTTACCGATGAAGCTGAGTGGTCTGATGGCTGGAAGTAA 2676 0.4111 MSIAGWSDEERSVIGDKAEIGFLDFEEEKSVCSYVDYEGVPVVVSAPFPFVDGKPQSVFVGDTAVDLITVRNTTDEPVDLWSVHIFASNPTDSFTLSLTEPPPENSNADGEQSCLESFTLEDRMLQPRENLKIWLSCKTKEIGMYSSVVYFDAGDEKIERVVFLLVEDKISKSLASKRPYSRAKKKDKFVVDTYVAGSRPAAKPTRRYINRLPRYEIPRNMRELLESNQIPQVVEEGLTRRTYSSYFKTLIIMEEIQLEEDMRIYDMESISMRKRNNQFLSMEVPGLAERRPSLVHGDYIFVKLACQRDNSNRQVYQGFIHRVEADEIYLKFTPEFHYYHKDENIYDVHFTYNRINMRRLYQAAEAAENLGTDFLFPSTSKKRHIKTTALVPISGTFNEEQICSIKMILGCKGAPPYLIHGPPGTGKTRTIVEAILQLYKYHKNTRILVCAPSNSAADYILERLLAQQDIELRETEIFRLNASTRPYEDVKPEVIRFCFFDDMVFKCPPVNALSYYRIIISTYMSASLLFAEDVARGHFSHIFLDEAGQASEPETLIPVSHLCTMKTVVVLAGDQLQLGPVIYSKKADEYGLGVSYMERLSELPLYASGDTNYVTRLIRNYRCHPAILHLPSKLFYCGELIACRDSSTFVTIGELLPNKEFPILFYGIQGCDEREGNNPSWFNRIEASKVIEVVRRLIAGGNIKEENIGIITPYRQQVSKIKQTLENLDMPDIKVGSVEQFQGQEMEVIIISTVRSTIKHNEFDRVHCLGFLSNYRRFNVAITRAISLLVIIGNPHIICKDDHWSQMLWYCVDNSSYQGCSLPERVEPYDDEDTGENPYLTEDNAEWGQDSTNNAEWGQDSTNNAEWGQDSSQIGLPNPVTDEAEWSDGWK 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02827 891 Pfam AAA domain 397 492 IPR041677 GO:0004386
Viun2g02827 891 Pfam AAA domain 513 585 IPR041677 GO:0004386
Viun2g02827 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 807 IPR027417 -
Viun2g02827 891 Gene3D - 622 822 IPR027417 -
Viun2g02827 891 MobiDBLite consensus disorder prediction 844 878 - -
Viun2g02827 891 Pfam AAA domain 594 795 IPR041679 -
Viun2g02827 891 FunFam Probable RNA helicase SDE3 347 491 - -
Viun2g02827 891 MobiDBLite consensus disorder prediction 823 891 - -
Viun2g02827 891 FunFam Probable RNA helicase SDE3 622 820 - -
Viun2g02827 891 Gene3D - 316 606 IPR027417 -
Viun2g02827 891 CDD DEXXQc_Helz-like 398 622 IPR026122 GO:0003723|GO:0032574
Viun2g02827 891 PANTHER CANCER/TESTIS ANTIGEN 55 116 382 - -
Viun2g02827 891 CDD SF1_C_Upf1 623 811 IPR047187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02827 Viun-Chr2 32910727 32915585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02827 396 553 Core DNA Replication Machinery Family AT1G08840 28.571 4.93e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02827 K18422 - gmx:100801796 1573.14