Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02803 ATGATGAGAACACCAAGCAGTGATGAGAGTGGGTTGAAGAAGGGGCCATGGAGCCCAGAAGAGGATAAAATATTAGTGGATTACATTCAGAAGCATGGCCATGGGAGTTGGAGAGCCCTTCCAAAGCTTGCAGGATTGAACAGATGTGGAAAGAGTTGCAGACTAAGGTGGACTAATTACCTCAGACCTGATATCAAAAGAGGCAAATTCTCTGATCAAGAAGAGCAACTCATCATCAATTTGCATGCAGTTCTTGGAAATAAGTGGGCAGCTATAGCATCTCATCTGCCAGGAAGAACTGATAATGAAATTAAGAATTTGTGGAACACACATTTAAGGAAAAAGCTATTGCAAATGGGGTTAGACCCAGTCACTCACCGTCCAAGAACCGATCACCTCAACCTTCTTACAAATCTGCAACAGATTTTGGCAGCTGCAAAAATTGTGAGCACTTTGACAAACCCTTCTGACATAAACAATGTTCTAAGGCTACACTCAGATGCCAAATTCCAGTTACTGCAAAACATGTTTCAACTCACTCCTTCCTCAAACTCTTTTCTACCATTAAACTCACTCACAGATGGTTTTATGAATCACTGTAATAATGATCTCCCAAACCTACTTCATGATGGTAATTCAGTTTCTGAAATTCACCCCAGTTTCCAAAACTTTGAGGCCCTTCACCACCCAACACAAGAAAATTCTCTTCCAAATCTGGTTTCTGCCTCGCCTGAACGTTCCCCATTGAAGGAAGCAGAAAATGTTAATGCAAACTCAAAGGAGTGTTCTAATCCTTCTTCTACCACCTTTGAGTTGGCTTGGGGAGATTTCATGGATGAAGATGCAACAGAGAATTATTGGAAAGGTTTCATAGACCAACATTGTAACCAGACATGGTCAACAGTCCAATGA 912 0.4134 MMRTPSSDESGLKKGPWSPEEDKILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDQEEQLIINLHAVLGNKWAAIASHLPGRTDNEIKNLWNTHLRKKLLQMGLDPVTHRPRTDHLNLLTNLQQILAAAKIVSTLTNPSDINNVLRLHSDAKFQLLQNMFQLTPSSNSFLPLNSLTDGFMNHCNNDLPNLLHDGNSVSEIHPSFQNFEALHHPTQENSLPNLVSASPERSPLKEAENVNANSKECSNPSSTTFELAWGDFMDEDATENYWKGFIDQHCNQTWSTVQ 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02803 303 CDD SANT 69 112 IPR001005 -
Viun2g02803 303 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun2g02803 303 CDD SANT 16 61 IPR001005 -
Viun2g02803 303 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun2g02803 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun2g02803 303 MobiDBLite consensus disorder prediction 232 263 - -
Viun2g02803 303 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun2g02803 303 Gene3D - 69 116 - -
Viun2g02803 303 SMART sant 13 63 IPR001005 -
Viun2g02803 303 SMART sant 66 114 IPR001005 -
Viun2g02803 303 Gene3D - 13 66 - -
Viun2g02803 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun2g02803 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 237 - -
Viun2g02803 303 FunFam MYB-related transcription factor 13 66 - -
Viun2g02803 303 FunFam Transcription factor MYB39 69 130 - -
Viun2g02803 303 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun2g02803 303 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02803 Viun-Chr2 32839210 32841343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02803 1 292 MYB Transcription Factor Family AT5G16770 49.544 2.60e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun2g02803 Myb_DNA-binding 7.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02803 K09422 - gmx:102660452 430.254