Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02798 ATGGAGGGAGCATCGTGGAACAGCAGTGTCTGTGTGGCACCGTTTCTGAGCAAAACCTACGACATGGTCGACGACCCCACCACCGATTCCGTCGTGTCGTGGGGCGAAAACAACAACACCTTTGTTGTCTGGAACGTTCCCCAGTTCGCCACAGACATCTTGCCCAAACATTTTAAGCATAACAACTTCTCCAGCTTCGTCAGGCAGTTGAATACTTATGGTTTTAGGAAGGTTGATCCAGATCAATGGGAATTTGCAAATGAAGGGTTTCTAAGAGGGGAAAAACAACTTCTAAAAAGTATCAGTAGGCGTAAATCTGCCCATGTAAATGGTAGTCAACAACAACCATCTCAAGTGCAAAAATCAGCTGTTAGAGCATGTGTCGAGGTGGGGAAATTTGGGCTTGAGGAAGAGGTGGAAATACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTAGTTAGGTTGAGACAGAAACAGCAAGTGACTGATAACCAAATGCAAAATGTTGGGCAACGCGTGCAGTCAATGGAGCAGCGGCAGCAGCAAATGATGTCATTCCTAGCAAAGGCCATGCACAGCCCTGGCTTCTTAGCTCAATTTGTACAGCAGCAGAATGAAAGTAACAAACATATCACTGGGGCTAATAAAAAGAGGAGGCTCCACAGTCAGGAAAAGGATAATTTAGCCACCAATAGTCTCCATAGTGGTCTTGATGGACACATAGTCAAGTACCAGAGTTCCATAAACAATGCTGCAAAATCATTATTTCGCCAGATACTGCAGATAAACAATTCTACAACAACACAATCGTCAATTAAGAACCCTGATGTTTTTCTCATTGACGATATTCCTTCTGCCATTGCATCAGATAGCAGCAGTTCATCCACTCAGGTTTCTAATGTGACCCTTTCTACCGTTCCTCCTGTTTCTGAACTAACAAGTATGGAAGTAGACTCCCAGTTTCCTGTCAATTGTATGCCCAGTATATCCGAGGTGCAATCTTCACCTGCTGTGTTGGACTTTTGTCAGAGTCAAGGGGTGGAAACTGAAAGCAGTTTAGTGAATCATAATCTGAATGGTGTGGAGGCTGGTAGTAGGAGCATGGCGGAGATAGACGTGTCATCTGTTTTGGATGGAGCGCACACTGTAGAAGCTGGTTATTCTTCAGCCGATGCAGATGGAATTTCTCAACTCCCTGATATCGATGATGAGTTCTGGGAGTTGTTTTTCAGGCCAAGCCCACTTACAGGAGACGCAGAGGAAATTAAATTTAGCTCTCTAGGATGTGGTCTGACTGAAGAACAGGGTTTGCCTTTGGAAAGGGAAAATGAGAAGAAAAATGTTGATAAGATGCAGCATGTTGACAATCTTACTAAACAGATGGGACTTCTTGCATCAAAGTCCTAA 1410 0.439 MEGASWNSSVCVAPFLSKTYDMVDDPTTDSVVSWGENNNTFVVWNVPQFATDILPKHFKHNNFSSFVRQLNTYGFRKVDPDQWEFANEGFLRGEKQLLKSISRRKSAHVNGSQQQPSQVQKSAVRACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQKQQVTDNQMQNVGQRVQSMEQRQQQMMSFLAKAMHSPGFLAQFVQQQNESNKHITGANKKRRLHSQEKDNLATNSLHSGLDGHIVKYQSSINNAAKSLFRQILQINNSTTTQSSIKNPDVFLIDDIPSAIASDSSSSSTQVSNVTLSTVPPVSELTSMEVDSQFPVNCMPSISEVQSSPAVLDFCQSQGVETESSLVNHNLNGVEAGSRSMAEIDVSSVLDGAHTVEAGYSSADADGISQLPDIDDEFWELFFRPSPLTGDAEEIKFSSLGCGLTEEQGLPLERENEKKNVDKMQHVDNLTKQMGLLASKS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02798 469 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02798 469 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02798 469 Coils Coil 132 159 - -
Viun2g02798 469 SUPERFAMILY "Winged helix" DNA-binding domain 12 104 IPR036390 -
Viun2g02798 469 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02798 469 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02798 469 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02798 469 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 292 IPR027725 -
Viun2g02798 469 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02798 469 Gene3D - 8 105 IPR036388 -
Viun2g02798 469 FunFam Heat shock transcription factor 1 8 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02798 Viun-Chr2 32803503 32807020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02798 12 469 HSF AT5G16820 52.361 2.28e-137 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun2g02798 HSF_DNA-bind 1.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02798 K09419 - gmx:100793665 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02798 2 32803503 32807020 Viun2g02798 2 32803503 32807020 ECH
Viun2g02798 2 32803503 32807020 Viun7g03383 7 35668205 35670493 PCT