Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02779 ATGAAGCTGAAAACATACGCTGGTCTCAGTTTCATTGCAACTCTGGCTATTATATATCATGCATTTAACAGTAGGGGTCAGTTTTATCCGGCAATGGTGTATCTCTCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTCTGGTCTTTATGTGTATTCTGTGGCAATTAACCAAGAAGATTTTCTTGGGTTCCCTCCGTGAGGCGGAGGTTGAGAGGTTAAACGAGCAATCGTGGAGGGAAGTCATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAAGACTTCTCTGTAACATTTCTTGCGATGGTTACGGCATTGTTGTTGATCAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTCGAGTACATCGAGACCACTCCTTCAGTGCCCATGTTGTCACATGTCCGAATTGTATCTTTTATGGGGTTCCTTCTTCTCTTAGATAGCCTTTTCTTATACAGTTCATTGAAGCATTTGATAGAAACTTGGCAGGCCTCGGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACCACCACCGTGTCAATTTTTGTAAAATATATTTTCTATGTTAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACTTTTTACCTGGAACTCATTAGGGACTTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTTGTAATCTTTGTAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGTTATCGTAAAATCACTTCAAATATGAATGATCGATTTCCAGATGCAACACCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGCCGTGAAGAGATGACTACAGCCAAGAAACTTATATGCGGACATCTCTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCATACGTGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGAACAACTGGAGCTGTAGGGCCGCAAGGATCACAGGCCGATGGTCAACGGCAAGGAACTGGGGCAGGCGGAGAAAGCGCTGCTCAAAATGAGGCTACGGATAATTTGAGTCGACATCAAGCCAGACTCCAAGCTGCTGCTGCTGCTGCTTCCATATATGAGAAGTCTTATGTGTACCCTTCTGCAAATTCTTTTGTATGTTCTCCTGGGTACACTCTCCATCCTCCGGTGACTGAATCTACTAATACAGACAGTAGTGGAGGGCAGACTTCCCGCGAACAAACACAAAGTCGGTTTCTTACCGCTTGTGGACCAACAAATGAATCTTATCCTCCAATGCAACACTTCCAATTTCTACCTTCCCAACCATATGCAGCCCTTGTGAATTATGGAAAAGGGTTTGAAAATGATCCAAATATCCCAAGCTCTCATCTGGAAGCTCATAGAAAACTCCTTCAATTCCAGATTCAGATTCTGCAAAATCAGCTCGAGATTCTGCAGAAGACAAGGTCTGATAGTAGTGTAGATGAGGGCACATCTTCATCAGATAGCAGAGGCAAGAGTGTCATTTCCTCATCTGAATCTGGTCATGCTTATACTGAGGAGATTCAAGATGGAAAAGCGTAA 1638 0.4341 MKLKTYAGLSFIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSLKHLIETWQASVSLFFCFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTGAVGPQGSQADGQRQGTGAGGESAAQNEATDNLSRHQARLQAAAAAASIYEKSYVYPSANSFVCSPGYTLHPPVTESTNTDSSGGQTSREQTQSRFLTACGPTNESYPPMQHFQFLPSQPYAALVNYGKGFENDPNIPSSHLEAHRKLLQFQIQILQNQLEILQKTRSDSSVDEGTSSSDSRGKSVISSSESGHAYTEEIQDGKA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02779 545 MobiDBLite consensus disorder prediction 506 536 - -
Viun2g02779 545 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 263 338 - -
Viun2g02779 545 MobiDBLite consensus disorder prediction 341 376 - -
Viun2g02779 545 MobiDBLite consensus disorder prediction 413 433 - -
Viun2g02779 545 Pfam Ring finger domain 290 329 IPR001841 -
Viun2g02779 545 Coils Coil 486 506 - -
Viun2g02779 545 SUPERFAMILY RING/U-box 271 335 - -
Viun2g02779 545 PANTHER RING ZINC FINGER PROTEIN 1 517 - -
Viun2g02779 545 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
Viun2g02779 545 CDD RING-H2_synoviolin 288 329 - -
Viun2g02779 545 SMART ring_2 291 328 IPR001841 -
Viun2g02779 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Viun2g02779 545 MobiDBLite consensus disorder prediction 339 376 - -
Viun2g02779 545 MobiDBLite consensus disorder prediction 506 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02779 Viun-Chr2 32718517 32724609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02779 1 531 C3H Transcription Factor Family AT3G16090 65.485 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02779 K10601 - gmx:100816441 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02779 2 32718517 32724609 Viun2g02779 2 32718517 32724609 ECH