Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun2g02761 | ATGGATGAGGGAAAGCATAAATCGAGGAAAGAAATTCACGAGGTGAAAGATGGGGATTCTAAGAGGAGTCACCGCGACCGTGACCGTGATAGAACTGGAGAAAGGGGTAAGGATAAAAACGATGGGAGGCACAGGGATAGGGAGAAGAGGGATCGTGAGTCCCGAAGACATGAACGAGAGAGGAGTACTGATTCTGAAGACAAGTATGATAGAGAGAGGGAGAAGCGAAAAGATAAAGACAAGGATGTGGATAGGGAAAGAGGTCGAGAGAAGAAAAGGGAAAGGGACAGGGACAGGGATGACAGGGAGAGGACAGACAGAGTAAGGGAAAAGGAGAAAGAGAGGGAAAGAAAAGAGGATAAGGAGAGGATCCGAGAGAGGGAAAGGGAAAGGAGGGATCATGAGAGAGAGAAGGAAAAGGAAAGAGAAAGGGTGAGGAGAGCACGAGAGAGGGAGAAGCGTAGAGAAGTTGATAGTGATTACAGTGATGGTGAATCTAGGGAGAGGGATAGAAAGCGGCACAAGAAAGAAGATGGTGATTACAAGAAGAGGGAGAGGGAAAGGAGCGTCAGCAAGCCAAGCAGGCAATCAGAGGAACGTGAAGGAAGCCCAAGAAAAAAGATTGTCGGAGATGACTCAGATACCAAAGATGGAGAGAAAAAACCTACCCGTGAAGAGGAGATGGAAAATGAACAAAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGAAGGAAGAAAGAAGAAGCAGAAAGAGAAAAGCATGGCGAAGTAAGTACTAATGAACCCGAGTCTGGAAAGACCTGGACGCTAGAAGGGGAATCTGATGATGAAGAAGGACCGGGTACTGAGAAGCATGATACAGGTATGGATGTAGATGAAGATGACAAACCTGCTGATATGGAACCTAAAGATGTGATGGTGGTAGACACTGATAATGGGACAATTACATCTGATTTACAGGAGGGAACTGCTGGTACACCTGATGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCCGAAGTTGAAAAGCTGAACAATGCTGTGACATCAGTAATTTCTGATAAAGCCATCGACATAAAAGCCAAAGATAAAGGGAATGAGCAAAGTCGAGGTGCACAGTCAAGGAAAGGTTCAAATAAGTCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGCTGATGATGAAGTTGAGAGGGATCCATTGGATGAAGATGATGACGAGTTCATGAAAAGAGTGAAGAAAACAAAAGCCGAGAAGCTTTCTTTAGTTGACCACTCAAAGATTGACTATGAACCATTCAAGAAAACTTTTTATATTGAGGTGAAGGAGATCTCGAAGATTGCTCCAGAAGAAGCTGCAGCATACCGGAAACAGTTGGAATTGAAGATACACGGGAAGGATGTGCCAAAGCCTATAAAATCATGGCACCAGACTGGACTTGCTAGCAAAATTTTGGAGACAATAAAGAAGATGAACTTTGACAAGCCTATGCCTATTCAAGCTCAGGCACTCCCTGTAATCATGAGCGGTCGAGATTGCATAGGGATTGCTAAAACTGGGTCAGGCAAAACACTTGCATTTGTTCTGCCTATGCTGAGGCATATCAAGGATCAGCCACCGGTTGTAGCCGGAGATGGACCTATTGGGCTTATTATGGCCCCTACGAGGGAACTTGTTCAACAGATTCACAGTGATATAAAAAAATTTGCTAAGGTGCTTGGTCTCAGGTGTGTGCCTGTGTATGGAGGCTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGAGGTGCTGAGATAGTTGTTTGTACTCCAGGTAGGATGATTGACATATTATGCACCAGTAGCGGAAAAATAACTAACTTGCGGAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATTACACGAATTGTTCAGAATATTCGTCCAGATCGTCAAACAGTTCTTTTCTCTGCTACATTCCCTCGTCAAGTTGAAATTCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGCGGGAGGAGTGTAGTGAACAAAGACATATTACAGCTAGTTGAGGTGAGACCAGATAATGAAAGGTTCCTTCGACTCTTAGAAATATTAGGGGAATGGTACGAGAAAGGGAAGATCCTGATATTTGTTCACTCCCAGGAGAAATGTGATAGTTTGTTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGACCAGACAGATCGAGAATCCACAATATCTGACTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTAGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACACCGTGTTGGACGCACTGGACGAGCTGGCCGCAAGGGTTGTGCCATTACATTTATATCTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAAGCCTTGGAATTATCTGAGCAGACTGTTCCCAATGATCTGAAAACTCTTGCTGATAGCTTTATGGCAAAGGTGAACCAAGGACTGGAACAAGCCCATGGGACTGGTTATGGAGGAAGTGGTTTTAAATTTAATGAAGAGGAAGATGAGGTAAGGAGAGCAGCAAAGAAAGCACAAGCCAAGGAGTATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTCGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTCTTGCACAGATTCTTGCTGCCACTAAAGTTAATGCTCCTGCATTGCCTACTCCCATCTCTGCTGCTCAACTGATTTCGAATGGTGGACTGCCTGTTTCTTTTCCGTCTGTTCTTGGTCTCCAAACCCCAACAGTTTTGCCTGGGACTGGGCTACCCCTTTCTGCAAATGATGGGGCAGCTCGAGCAGCACTAGCTGCGATGAACCTGCATCGCAACATAGAAAAAATACAATCAGAAGCATTACCAGAGCATTATGAGGCCGAGTTAGAAATAAATGATTTCCCCCAGAATGCTCGGTGGAAAGTTACTCATAAGGAAACATTAGGCCCCATATCTGATTGGACAGGAGCTGCCATTACCACCAGGGGACAGTTCTTCCCACCTGGAAAGATCCCAGGACCTGGAGAACGCAAACTCTACTTGTTCATTGAAGGTCCTACTGAGCAGTCTGTTAAGACAGCTAAAGCACAGTTGAAACGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGAAATCAACCGGGCAAATACTCTGTTGTGTAA | 3396 | 0.4432 | MDEGKHKSRKEIHEVKDGDSKRSHRDRDRDRTGERGKDKNDGRHRDREKRDRESRRHERERSTDSEDKYDREREKRKDKDKDVDRERGREKKRERDRDRDDRERTDRVREKEKERERKEDKERIRERERERRDHEREKEKERERVRRAREREKRREVDSDYSDGESRERDRKRHKKEDGDYKKRERERSVSKPSRQSEEREGSPRKKIVGDDSDTKDGEKKPTREEEMENEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEVSTNEPESGKTWTLEGESDDEEGPGTEKHDTGMDVDEDDKPADMEPKDVMVVDTDNGTITSDLQEGTAGTPDDEEIDPLDAFMNSMVLPEVEKLNNAVTSVISDKAIDIKAKDKGNEQSRGAQSRKGSNKSIGRIIPGEESDSDYADDEVERDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKTFYIEVKEISKIAPEEAAAYRKQLELKIHGKDVPKPIKSWHQTGLASKILETIKKMNFDKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDILQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQTVPNDLKTLADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKVNAPALPTPISAAQLISNGGLPVSFPSVLGLQTPTVLPGTGLPLSANDGAARAALAAMNLHRNIEKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEQSVKTAKAQLKRVLEDITNQALQLPGGNQPGKYSVV | 1131 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun2g02761 | 1131 | Coils | Coil | 108 | 155 | - | - | |
Viun2g02761 | 1131 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 493 | 521 | IPR014014 | GO:0003724 | |
Viun2g02761 | 1131 | MobiDBLite | consensus disorder prediction | 909 | 923 | - | - | |
Viun2g02761 | 1131 | MobiDBLite | consensus disorder prediction | 1 | 270 | - | - | |
Viun2g02761 | 1131 | Pfam | DEAD/DEAH box helicase | 518 | 689 | IPR011545 | GO:0003676|GO:0005524 | |
Viun2g02761 | 1131 | CDD | KH-I_AtRH42_like | 1029 | 1130 | - | - | |
Viun2g02761 | 1131 | MobiDBLite | consensus disorder prediction | 408 | 423 | - | - | |
Viun2g02761 | 1131 | MobiDBLite | consensus disorder prediction | 1 | 343 | - | - | |
Viun2g02761 | 1131 | Coils | Coil | 225 | 262 | - | - | |
Viun2g02761 | 1131 | CDD | SF2_C_DEAD | 714 | 844 | - | - | |
Viun2g02761 | 1131 | MobiDBLite | consensus disorder prediction | 278 | 316 | - | - | |
Viun2g02761 | 1131 | PANTHER | RNA HELICASE | 436 | 913 | - | - | |
Viun2g02761 | 1131 | SMART | ultradead3 | 512 | 717 | IPR014001 | - | |
Viun2g02761 | 1131 | Gene3D | - | 703 | 877 | IPR027417 | - | |
Viun2g02761 | 1131 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 524 | 702 | IPR014001 | - | |
Viun2g02761 | 1131 | MobiDBLite | consensus disorder prediction | 372 | 386 | - | - | |
Viun2g02761 | 1131 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 476 | 704 | IPR027417 | - | |
Viun2g02761 | 1131 | CDD | DEADc_DDX46 | 482 | 703 | - | - | |
Viun2g02761 | 1131 | MobiDBLite | consensus disorder prediction | 909 | 940 | - | - | |
Viun2g02761 | 1131 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 730 | 874 | IPR001650 | - | |
Viun2g02761 | 1131 | FunFam | probable ATP-dependent RNA helicase DDX17 | 455 | 705 | - | - | |
Viun2g02761 | 1131 | Pfam | Helicase conserved C-terminal domain | 727 | 835 | IPR001650 | - | |
Viun2g02761 | 1131 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 640 | 875 | IPR027417 | - | |
Viun2g02761 | 1131 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 648 | 656 | IPR000629 | - | |
Viun2g02761 | 1131 | Gene3D | - | 445 | 702 | IPR027417 | - | |
Viun2g02761 | 1131 | SMART | helicmild6 | 754 | 835 | IPR001650 | - | |
Viun2g02761 | 1131 | MobiDBLite | consensus disorder prediction | 371 | 427 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun2g02761 | Viun-Chr2 | 32635230 | 32640442 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun2g02761 | 480 | 855 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 31.842 | 8.62e-57 | 201 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun2g02761 | K12811 | - | gmx:100784306 | 1716.82 |