Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02730 ATGGATCAGGAACCAAAAACAAGCACCATGCAACAATGTGGAACAGCCCCGACAACAACATCATCATCGTATCGTGGTGTTCGACAACGAAAATGGGGCAAATGGGTGTCGGAAATCCGCGAGCCGGGGAAGAAGAGCAGAATATGGTTGGGGAGCTATGAGTCGCCGGAGATGGCAGCAGCAGCTTATGACGTGGCGGCGTTGCACCTCAGAGGACGCGCCGCCAGACTCAATTTTCCTGAACTGGCGGAGACACTGCCACGTCCCGCCAGCTCCAAAGCCGAGGATGTACAGGTGGCAGCACAACAAGCGGCGTTGAGGTTCACTAGGTCACCAACAATGTCACATGATCAGATATGTGTCAGTGAAACTAGTGACAGTAACAGTAACAGGAACAAGAACAGGAACAGTGTGGTTCCTCTGCAAGTGGGGCTTTCGGCTACACAGATTCAAGCTATAAATGAGTCTCCATTGGAGTCACCGAAGATGTGGATGATGCAAATGGCAGAGACACTTAGGTTTGGGTTTGGTGATGAGTACTCTATGATGATGGTGTCTTGTGATGGTGATGGTGATGATGATTATGCCATGGAGTTGAGTGGATGGGAAGAAATGCATCATGAATCCTTATGGGACTCTCCTGAATATATGTGA 654 0.4954 MDQEPKTSTMQQCGTAPTTTSSSYRGVRQRKWGKWVSEIREPGKKSRIWLGSYESPEMAAAAYDVAALHLRGRAARLNFPELAETLPRPASSKAEDVQVAAQQAALRFTRSPTMSHDQICVSETSDSNSNRNKNRNSVVPLQVGLSATQIQAINESPLESPKMWMMQMAETLRFGFGDEYSMMMVSCDGDGDDDYAMELSGWEEMHHESLWDSPEYM 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02730 217 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Viun2g02730 217 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Viun2g02730 217 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Viun2g02730 217 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Viun2g02730 217 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Viun2g02730 217 MobiDBLite consensus disorder prediction 1 27 - -
Viun2g02730 217 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Viun2g02730 217 CDD AP2 22 82 IPR001471 GO:0003700|GO:0006355
Viun2g02730 217 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Viun2g02730 217 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Viun2g02730 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02730 Viun-Chr2 32534133 32535139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02730 22 212 AP2-EREBP Transcription Factor Family AT1G71450 48.691 2.99e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun2g02730 AP2 3.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02730 - - pvu:PHAVU_002G036000g 361.303