Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02714 ATGAGTAAAAGTTCAGCGCTGCATGCAACCAGTCCAAGTAGGGACAACAAGTTTAAGGGTGTTCGCCGTCGCAAATGGGGCAAGTGGGTGTCGGAGATTCGAGTTCCGGGAACCCAGGAGCGGCTCTGGCTGGGGACCTACATCACGCCGGAGGCGGCGGCGGTTGCTCACGACGTCGCCGTGTACTGTCTCAGAAGGCCTTCTTCGTTGGAGAAACTGAACTTGCCAGAAACCTTGTGTTCTTACAGTGGTCAGCTGAGGGACATGTCTCCGAGGTCTGTTCAGAAGGTGGCTTCCGACGTTGGCATGGATGTTGACGCCAGAAACATTGCCGCCGGCGGAAGTTCAAGTGGGGTGGCACAAAATCAGGAGAGTGAGAAGAAAATGGAGGAGATTGGAGCAGGTGGTGATCATTGTGATGAGTTTTGGTGGGATGGTTTGGAGGGTGGTGATTCTGGGACATGGAAAGGAAATGGTGAAGATTGTACAGATAGGAATGGCTTGAACATTTCCATTGAAGACTATCTTTAG 531 0.5217 MSKSSALHATSPSRDNKFKGVRRRKWGKWVSEIRVPGTQERLWLGTYITPEAAAVAHDVAVYCLRRPSSLEKLNLPETLCSYSGQLRDMSPRSVQKVASDVGMDVDARNIAAGGSSSGVAQNQESEKKMEEIGAGGDHCDEFWWDGLEGGDSGTWKGNGEDCTDRNGLNISIEDYL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02714 176 CDD AP2 17 51 IPR001471 GO:0003700|GO:0006355
Viun2g02714 176 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Viun2g02714 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 125 - -
Viun2g02714 176 SUPERFAMILY DNA-binding domain 17 69 IPR016177 GO:0003677
Viun2g02714 176 Gene3D AP2/ERF domain 16 77 IPR036955 GO:0003700|GO:0006355
Viun2g02714 176 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Viun2g02714 176 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Viun2g02714 176 ProSiteProfiles AP2/ERF domain profile. 17 76 IPR001471 GO:0003700|GO:0006355
Viun2g02714 176 SMART rav1_2 17 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02714 Viun-Chr2 32470976 32472163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02714 10 131 AP2-EREBP Transcription Factor Family AT1G71520 54.839 1.59e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun2g02714 AP2 3.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02714 - - gmx:100816257 234.958