LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun2g02708	ATGGGGTGCATCTGCTCAAAAGACTCCTCAAACAAAGACAGAGTTGATGAGTACGAGAAAGAAAAAGAAAAAGAAAAAGAATCGAACAAGTCTTCGGTGCAACTTGTTGCTCCTTCTGTCTCAACTGCAGAGTCAGACAGTGCAAGAGGCAAGGATGGTTCGGTTCCCCGAATTGTTGACTCATCATCACAAGCAATTAAAGGGTCTGTCATAGTGGCGACAGAGGATAAAAGCAACCACTCAGATGCCACAAAAAGCCAGCTCCAGCGGCGCGTGACAGTGACGTGTGGTGTAGATGACAAAATGCCGATGATGAGCAGAATACTTAGCGTGCAGCATATTGCAGGAGAACAAGTTGATTTCGGGTGGCCAATTTGGTTATCTTCTGTGGCAGCAGAAGCCATCAAAGGGTGGGTGCCTCGACGGGCAGACTCTTTTGAAAAATTAGGCCAAGTTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCGTGATCTTGAGACTGGTAAAGTTGTGGCTTTGAAGAAGGTTCGGTTTTCAAGTGCAGAGGTGGAAAGTGTAAGGTTCATGGCAAGAGAAATCTATATTATGCGTCAACTTGACCATCCTAATGTCATGAAGCTCGAGGGTCTTGTCACTTCAAGAACGTCTACCAGTTTGTACCTTGTTTTTGAGTACATGGAACATGACCTCGCTGGGCTAGCAACTGCACATGGCTCGAAGTTGACTGAACCACAGATAAAATGTTTTATGCAGCAACTGCTACGTGGGCTTGAACATTGCCACAGTCGTGGTGTGCTGCACCGTGACATCAAGGGTTCGAATCTTCTTGTTGACAACAATGGAAATCTTAAAATAGGAGATTTTGGTCTTGCAACAATATATGATCCTAAAAAAAAGCAGCCATTGACTAGCCGTGTTGTGACTCTGTGGTATAGGGCACCTGAGCTTTTGCTGGGTGCTACAGAGTATGGAGAAGCAATTGACATGTGGAGTGTTGGTTGCATTCTAGCCGAATTGCTAGCGGGGAAGCCAATCATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAACTTTGTGGTTCGCCATCTGAAGACTATTGGCAGAGAACAAAGTTTCCTCATGCAACAAGTTTTAAGCCACAACAACCTTACAACCGCCAAATTTCAGAAACATTTAAAAATTTTTCTTCCCCGGCATTGGCTCTTGTTGATAAGCTCCTGACAATAGAACCAGAGGGTCGAGGATCAGCAACTTCCGCACTCGAGAGTGAGTTCTTCACAACAAACCCCTTACCTTGTGATCCCTCAAGTTTACCAAAGTTTTCACCAAGCAAGGAGTTTGATTCCAGGCGTCGACAAAAGGAAGCTACAAGGAAAAACCAGGAAGCTGTTAAAGGACGTGCACCAGCATCTGTTTTAAGAGGAGCAAGAGATACCAAGGCACTGGGTTCACCACATTATAACGCTCAGGGAAATATATCAGTGCTGAGGAAACCAAATAGCATAATGTGCCGTCAAAAATATCCGTGCCAGGAGAATAGGGAGGGCAAGGAGAACGGTGAAGGAGGCAGAGTAAGTGTACACGGTGGCTTCACGCATGCTGCTACAATGACACGCGGCAGTGTAGCAGGATCATCCATATTCTGTAAGAGAGTAGAACCATCTTTGAAGAATCAGAGGTCTCATTTGAATCCTGCAACAGCAGATTTATGTACCTCTGTCGTCAAAAAGGAACCAGACTCGTCTGCTCTTGAATCCACCATGGGTCATATGCCAAAGAAAAATAGGATACACTGCTCTGGACCATTGGTGCCTCCGGGTGGGAACCTCGATGACATGCTTCGAGAGCATGAGAAATTAATGCAAGATGTTTTCCGTAGCGTCAAAAAGGCCAATCCGTAA	1914	0.453	MGCICSKDSSNKDRVDEYEKEKEKEKESNKSSVQLVAPSVSTAESDSARGKDGSVPRIVDSSSQAIKGSVIVATEDKSNHSDATKSQLQRRVTVTCGVDDKMPMMSRILSVQHIAGEQVDFGWPIWLSSVAAEAIKGWVPRRADSFEKLGQVGQGAYSSVHKARDLETGKVVALKKVRFSSAEVESVRFMAREIYIMRQLDHPNVMKLEGLVTSRTSTSLYLVFEYMEHDLAGLATAHGSKLTEPQIKCFMQQLLRGLEHCHSRGVLHRDIKGSNLLVDNNGNLKIGDFGLATIYDPKKKQPLTSRVVTLWYRAPELLLGATEYGEAIDMWSVGCILAELLAGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKFPHATSFKPQQPYNRQISETFKNFSSPALALVDKLLTIEPEGRGSATSALESEFFTTNPLPCDPSSLPKFSPSKEFDSRRRQKEATRKNQEAVKGRAPASVLRGARDTKALGSPHYNAQGNISVLRKPNSIMCRQKYPCQENREGKENGEGGRVSVHGGFTHAATMTRGSVAGSSIFCKRVEPSLKNQRSHLNPATADLCTSVVKKEPDSSALESTMGHMPKKNRIHCSGPLVPPGGNLDDMLREHEKLMQDVFRSVKKANP	637

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun2g02708	637	SMART	serkin_6	146	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g02708	637	SUPERFAMILY	Protein kinase-like (PK-like)	139	438	IPR011009	-
	Viun2g02708	637	Gene3D	Phosphorylase Kinase; domain 1	133	228	-	-
	Viun2g02708	637	MobiDBLite	consensus disorder prediction	9	30	-	-
	Viun2g02708	637	PANTHER	CELL DIVISION PROTEIN KINASE	144	436	-	-
	Viun2g02708	637	MobiDBLite	consensus disorder prediction	448	466	-	-
	Viun2g02708	637	MobiDBLite	consensus disorder prediction	432	475	-	-
	Viun2g02708	637	FunFam	probable serine/threonine-protein kinase At1g54610	229	470	-	-
	Viun2g02708	637	MobiDBLite	consensus disorder prediction	1	59	-	-
	Viun2g02708	637	ProSitePatterns	Protein kinases ATP-binding region signature.	152	175	IPR017441	GO:0005524
	Viun2g02708	637	MobiDBLite	consensus disorder prediction	31	48	-	-
	Viun2g02708	637	Coils	Coil	15	35	-	-
	Viun2g02708	637	FunFam	probable serine/threonine-protein kinase At1g54610	133	228	-	-
	Viun2g02708	637	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	266	278	IPR008271	GO:0004672\|GO:0006468
	Viun2g02708	637	Gene3D	Transferase(Phosphotransferase) domain 1	229	470	-	-
	Viun2g02708	637	CDD	STKc_CDK9_like	146	430	-	-
	Viun2g02708	637	ProSiteProfiles	Protein kinase domain profile.	146	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g02708	637	Pfam	Protein kinase domain	146	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun2g02708	Viun-Chr2	32460117	32464276	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun2g02708	138	469	Core Cell Cycle Gene Families	AT5G10270	51.437	2.26e-119	363

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Viun2g02708		Pkinase	9.6e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun2g02708	K08819		-	gmx:100791743	942.954