Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02679 ATGTTGTGTTTGCTACTGTTCATGTTTCTTCTCCCTCTCAGAGCGGAATCAACACCGTGCCAAACCATGTCATGCGGCAAAATCAAAATTCAGTTTCCATTTGGTTTGAAACAAACACAAACGCAAACGGAAAGTTCTGGTCGCTGCAGCTACCCGAGATTCCAACTTTCCTGCGACAACCGAAACCGAACCATTCTGAGCCTCCCAGGTTCCGGCGATTTGGTGGTGAAAAGCATAAACTACAAGTCCCAAACCGTTAAGGTGAACGACCCCGAAGGTTGTCTCCCGAAACGTTTCTTGCACAACTTGAGCCTTTCTCTGCACCCACCGTTCACGTTTGAGGCAACCGTTTACGACCTAACCTTCCTTCGTTGTCCTTCCAACACAACACACTCCGTTCCATCCCCGCCAATTTCATGTCTCGGTTCCAATTCCTCCTCCTCCGTCACATTCTCGTGGTGGCCTCTCAGCGGCACGCCACCGTGGAGTCACGAGTGCGAGGTGATATCCTCGGCTTTTGTTCCCATTCCAAATCCCGACACGACATCGTTTTTCTTGCCCGATCTCAACAAGGATGTCGTGTTGAAGTGGAACGAACCCGCGTGTGGGGACTGTGCTGGTCGCGGCCAGGTTTGTGGGTTCACCGATGACACCAACACTTTACAAGTTGGATGCTTCTTCTCTGCTCCGAACCAAAACCAAGGTCTGTCAAGAAGCGCAAAATATGGCTTAACGATCGGAGTGGGAATACCTGGACTCCTATGTTTAACTGGGCTTTGCTGCTTTATGTGTAGTAAATTCGATGTGTACACACATGGCCACCGGGCCAGGCCCAGTACAGAGTTTCCAAACTCTACTACCACTCTTCCACACTCCTCTTCCACAATGGGCCTTAATGGGCCGGAAATTGAAAAATTCCCGAAGACTCTAATCGGTGACAGTGGGCGCTTACCGAATTGGAACGATAACACGTGTCCAATATGTCTCTCCGAATACGAGCCCAAGGAGACTCTGAGAACCATTCCTGCGTGTAACCATTATTTTCATGCACACTGCATAGATGAGTGGCTGAAAATGAATGCCACGTGTCCCTTGTGCAGAAATTCACCACATCCATCTTCCACACTTACTCCTTCTTCTTCTTCAACATCTACCTATTCCTCTTTGCCATAG 1173 0.491 MLCLLLFMFLLPLRAESTPCQTMSCGKIKIQFPFGLKQTQTQTESSGRCSYPRFQLSCDNRNRTILSLPGSGDLVVKSINYKSQTVKVNDPEGCLPKRFLHNLSLSLHPPFTFEATVYDLTFLRCPSNTTHSVPSPPISCLGSNSSSSVTFSWWPLSGTPPWSHECEVISSAFVPIPNPDTTSFFLPDLNKDVVLKWNEPACGDCAGRGQVCGFTDDTNTLQVGCFFSAPNQNQGLSRSAKYGLTIGVGIPGLLCLTGLCCFMCSKFDVYTHGHRARPSTEFPNSTTTLPHSSSTMGLNGPEIEKFPKTLIGDSGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRNSPHPSSTLTPSSSSTSTYSSLP 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02679 390 CDD RING-H2_EL5-like 325 367 - -
Viun2g02679 390 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 370 IPR046948 -
Viun2g02679 390 MobiDBLite consensus disorder prediction 370 390 - -
Viun2g02679 390 ProSiteProfiles Zinc finger RING-type profile. 325 367 IPR001841 -
Viun2g02679 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 372 IPR013083 -
Viun2g02679 390 SMART ring_2 325 366 IPR001841 -
Viun2g02679 390 Pfam Ring finger domain 323 367 IPR001841 -
Viun2g02679 390 Pfam Wall-associated receptor kinase galacturonan-binding 20 90 IPR025287 GO:0030247
Viun2g02679 390 SUPERFAMILY RING/U-box 319 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02679 Viun-Chr2 32313718 32316608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02679 20 373 C3H Transcription Factor Family AT2G46495 35.262 5.08e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02679 - - ahf:112732430 369.007