Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02651 ATGACTACGCCACCACCCACCAAGTACACTCACCACACCAAACTACTCACCCAAACACACCCACCAAAAAACCCATGTCCCAGACTAGTCAGAATAACCGTCACTGACACTGACGCCACCGACTCCTCCAGCGATGAAGAGCAAACCTTCCACTCTTCCAAACGCCAACGCCACAGGAGATTCATCAACGAGATTTCCATCGAGCCCTGTACCACCGAGAACAACAACGGCGACACCAACGGCGGCAACGGCGTCTTTTCTAAGAAGAGAGTTCGAAGAAGGAGTGTGGTGGGCAAAGGCAGGACTGCAGAGACTCCGCGCGTGTCCACCGGAAAGAAATTCCGCGGTGTGAGACAAAGGCCATGGGGAAAATGGGCTGCGGAGATACGAGACCCGTCGCGACGCGTAAGGTTATGGTTGGGTACCTACGACACTGCCGAGGAAGCCGCCTTAGTGTATGACAACGCGGCCATTAAGCTGCGTGGACCCGACGCGCTCACCAATTTCATAATGCCACCTGCTACGTGGCACAACAAAGACCAGACGCCGGTGTCCAACGCTTCTTCCTCTGCTGAGGACACCGTAACTCAGAACAAAAACCTGTTTTCTCCCACCTCCGTACTTCACTCTTGTTCTTTGTCTGAGGAAGCTGAATCCGTGGCCGGCAAAGACGATGAATCCTCATCCGTGTCAGAGAGTTCCAAGGCCAAAGCTGAGTCACCGTTTCCGGTTCCGATTCCCAATGAACTAAAATTTGACTTCCCAGACTTTTTGGCGGCGCCGGACGTGTACGGCGAGTTGGGTGGCGCTGCGGCGGCCGAGAGTGTTTTGTTCCCGGATGATGAGTGGTCTGGTTTGTTTCTCACTGCTTGTGAGGATTTCGGTTTGAAAAGTTGGCATACGGACAGAAATCATGACTTTTTCCAAGATATCGATGATTTATTTGTCTCCGATCCTCTTCTTGCTCTTTGA 972 0.5257 MTTPPPTKYTHHTKLLTQTHPPKNPCPRLVRITVTDTDATDSSSDEEQTFHSSKRQRHRRFINEISIEPCTTENNNGDTNGGNGVFSKKRVRRRSVVGKGRTAETPRVSTGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAALVYDNAAIKLRGPDALTNFIMPPATWHNKDQTPVSNASSSAEDTVTQNKNLFSPTSVLHSCSLSEEAESVAGKDDESSSVSESSKAKAESPFPVPIPNELKFDFPDFLAAPDVYGELGGAAAAESVLFPDDEWSGLFLTACEDFGLKSWHTDRNHDFFQDIDDLFVSDPLLAL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02651 323 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Viun2g02651 323 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Viun2g02651 323 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Viun2g02651 323 SUPERFAMILY DNA-binding domain 113 170 IPR016177 GO:0003677
Viun2g02651 323 MobiDBLite consensus disorder prediction 1 20 - -
Viun2g02651 323 MobiDBLite consensus disorder prediction 218 232 - -
Viun2g02651 323 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Viun2g02651 323 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Viun2g02651 323 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 238 - -
Viun2g02651 323 CDD AP2 112 169 IPR001471 GO:0003700|GO:0006355
Viun2g02651 323 MobiDBLite consensus disorder prediction 218 242 - -
Viun2g02651 323 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Viun2g02651 323 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Viun2g02651 323 MobiDBLite consensus disorder prediction 91 114 - -
Viun2g02651 323 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02651 Viun-Chr2 32158834 32160854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02651 5 323 AP2-EREBP Transcription Factor Family AT4G23750 40.278 1.42e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun2g02651 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02651 - - vra:106777252 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02651 2 32158834 32160854 Viun2g02651 2 32158834 32160854 ECH
Viun2g02651 2 32158834 32160854 Viun3g00496 3 2929408 2930835 PCT