Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02619 ATGAATGAAGAGAAGGGTCTAGAAGAACACTCCCTGCTTAGAAATAACACTGTGGAACACACGTCAACGAGCACACTCCAAATCGAAATGGCGAAAGAACTTGAGAAGAAAGCGAAGGAAGCATTCTTCGACGACGACTTCGCTCTCGCCGTCGATTTCTATTCCGAAGCCATAAAACTAGATCCAAACGACGCTCATCTCTTCGCTGACCGAGCACAAGCCCATATTAAGCTCAACGCTTTCACTGAAGCAGTTTCCGATGCCAACAACGCCATCCAGTTAAACCCTTCCTTGTCCAAGGCCTATATTCGCAAAGGGACCGCTTGTATGAAGCTAGAAGAATATCACACTGCCAAGGTAGCACTTCAAAACGGTGCCGCTTTTGCGCCAGATGATTTAAGATTCTCCAAGTTGATTCAAGAATGCGATCGCTTTATTTCAGAGGAATCAAATGGTCTTGTTAGCACCTTATCGTCAAATGGTTCCCACTTGAGCATTAGGAATGACGGGGTGGCCAAAGAAGCTGAGGAAGACAGTTTGGTATCCCAAATCAAGGAAGTCACAATAAACAGACCAAAATACAGACATGAATACTACCAAAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATATCAGCAAAGGATTTGGTTGTTGACTTCGGTGAACAGATTCTTAGTGTAACTATTGATGTTCCTGGGCAAGATGCCTATCGTTTCCAACCTCGATTGTTTGGGAAGATAATACCCAACAACTGCAAAGTTGTGGTATTGTCAACCAAAATTGAAATTCGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATAGCAAGGATACACTACCTACTAAAATAAGCATGCCTATAGTTCAATCTCAAAGGCCTTCATACCCATCATCAAAAGCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCTAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGGTTTGAATAAATTGTTCCGTGATATTTACCAGAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCGTGGAGTCAAATGGAACAGTGCTATCAACCGATTGGAAAGAAGTGGGATCAAAGAAGGTAGAAGGCAGTCCTCCAGATGGCTTGGAGCTGAAAAAATGGGAGTATTAA 1179 0.4232 MNEEKGLEEHSLLRNNTVEHTSTSTLQIEMAKELEKKAKEAFFDDDFALAVDFYSEAIKLDPNDAHLFADRAQAHIKLNAFTEAVSDANNAIQLNPSLSKAYIRKGTACMKLEEYHTAKVALQNGAAFAPDDLRFSKLIQECDRFISEESNGLVSTLSSNGSHLSIRNDGVAKEAEEDSLVSQIKEVTINRPKYRHEYYQKPEEVVVTIFAKGISAKDLVVDFGEQILSVTIDVPGQDAYRFQPRLFGKIIPNNCKVVVLSTKIEIRLAKAEAINWTSLEYSKDTLPTKISMPIVQSQRPSYPSSKARTKDWDKLEALVKKEEKEEKLDGDAGLNKLFRDIYQNADEDMRRAMSKSFVESNGTVLSTDWKEVGSKKVEGSPPDGLELKKWEY 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02619 392 ProSiteProfiles TPR repeat profile. 31 64 IPR019734 GO:0005515
Viun2g02619 392 MobiDBLite consensus disorder prediction 1 15 - -
Viun2g02619 392 PANTHER PROTEIN SGT1 HOMOLOG 30 390 IPR044563 GO:0051087
Viun2g02619 392 SMART tpr_5 99 132 IPR019734 GO:0005515
Viun2g02619 392 SMART tpr_5 31 64 IPR019734 GO:0005515
Viun2g02619 392 SMART tpr_5 65 98 IPR019734 GO:0005515
Viun2g02619 392 MobiDBLite consensus disorder prediction 1 20 - -
Viun2g02619 392 FunFam Protein SGT1 homolog 30 156 - -
Viun2g02619 392 SUPERFAMILY HSP20-like chaperones 190 286 IPR008978 -
Viun2g02619 392 Pfam SGS domain 310 390 IPR007699 -
Viun2g02619 392 Pfam CS domain 195 270 IPR007052 -
Viun2g02619 392 SUPERFAMILY TPR-like 29 142 IPR011990 GO:0005515
Viun2g02619 392 FunFam Protein SGT1 homolog A 189 293 - -
Viun2g02619 392 CDD p23_CS_SGT1_like 197 280 - -
Viun2g02619 392 MobiDBLite consensus disorder prediction 373 392 - -
Viun2g02619 392 ProSiteProfiles CS domain profile. 191 280 IPR007052 -
Viun2g02619 392 Gene3D - 192 283 IPR008978 -
Viun2g02619 392 Gene3D Tetratricopeptide repeat domain 22 154 IPR011990 GO:0005515
Viun2g02619 392 ProSiteProfiles SGS domain profile. 301 392 IPR007699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02619 Viun-Chr2 31994802 31998976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02619 30 125 U-box Gene Family AT3G07370 32.292 2.59e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02619 K12795 - gmx:100784022 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02619 2 31994802 31998976 Viun2g02619 2 31994802 31998976 ECH