Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02614 ATGGGTCACCACTCTTGCTGTAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCCCCCGAGGAAGATGAAAAGCTCATCAGATACATTACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGAAGGTTTACACCAGAAGAAGAGAAGTTAATTATAAGTCTTCACGGGGTTGTTGGCAACAGATGGGCGCACATTGCAAGCCACTTACCAGGTAGAACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCGGTGACTTCATCGATCACCACCACACAAAGTGTGGATCACCACCCTCAGTTCAATTATAATTCCACTCAACTAGATCACTTCGGGAACCAAGACATTGTAACAACAAAACCAGCGGTGCAAGAAACCATATTTTCCTCGACGTGCCCCCTATTTATGTTTGACACTAGTTCATTAGACCACGGGACAACAACGGTAGACACCACCAATGTTCGAGCAGAACTGTTCCAAGATTCATTGGGTTTGAGCAGTGAAACGTGGAACTTGAGCCACCACCAAGTCCATGCTCTTCCTCCCCCACCAGCAACAGCAGCAGCAACTTTTACAGCCGCTACAGTGATTGATGCTACAAATTATCTGCCACCGTTGATAGAGAATGTGGAAAACATGGTGCCAAACATGGAAGTGCAGGGTTGTAGTATAGACGAGGAAGGAGAACTGGCACTGGAGTGTTTGCGGAGACAAGAGTTGAATGAGTGGGTGGAGAATCAACAACACTGTCCCAGTTTTCTTTTCTGGGACAGCGTTGAAGGACAACTTGGGGGGGAAGAACTAGCACCAAACACGTCAAATATTGGAACCAATACACTTTCACCTTTTCCTTCATCTTTAACATTCTTTCCGTCGCCGCTGCACGTAGCAACCATGATTATTTCCGAGAAGAACCGTCGAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTACAATCTGGCGAAGCACCCGGAGATTGATGTTCCAAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAGTCCAGGGAGTACGTGCGCGAGACATTTGCTTGGATGCATTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGAACATATCTCAACCTTCCCTCAGAAATCGTGCCCGCCACTCTTAAGAAGCAGGCCAAGCCCGCCGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGAGGGAGAGAGGAGATTCGGTGGTGATAGAGATGGATACCGTGGGGGTCCTCGGGGACCTGGTGGTGACTTTGGGGACAAGGGTGGAGCTCCTGCTGATTACAGACCTTCCTTTGGGGGTCCTAGTGGAAGGTCTGGTTTCGGTCGTGGATCTGGTGGTTTTGGAGCACCAACAAGTTCAAACAATTCTTAA 1542 0.4792 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVTSSITTTQSVDHHPQFNYNSTQLDHFGNQDIVTTKPAVQETIFSSTCPLFMFDTSSLDHGTTTVDTTNVRAELFQDSLGLSSETWNLSHHQVHALPPPPATAAATFTAATVIDATNYLPPLIENVENMVPNMEVQGCSIDEEGELALECLRRQELNEWVENQQHCPSFLFWDSVEGQLGGEELAPNTSNIGTNTLSPFPSSLTFFPSPLHVATMIISEKNRREICKYLFQEGVCFAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPSGRSGFGRGSGGFGAPTSSNNS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02614 513 CDD SANT 69 112 IPR001005 -
Viun2g02614 513 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Viun2g02614 513 MobiDBLite consensus disorder prediction 425 513 - -
Viun2g02614 513 FunFam MYB transcription factor 6 66 - -
Viun2g02614 513 Gene3D - 68 138 - -
Viun2g02614 513 CDD SANT 17 61 IPR001005 -
Viun2g02614 513 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun2g02614 513 PANTHER MYB DOMAIN PROTEIN 55 1 217 - -
Viun2g02614 513 SMART sant 66 114 IPR001005 -
Viun2g02614 513 SMART sant 13 63 IPR001005 -
Viun2g02614 513 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun2g02614 513 Pfam Plectin/S10 domain 337 428 IPR005326 -
Viun2g02614 513 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun2g02614 513 FunFam Transcription factor MYB26 68 137 - -
Viun2g02614 513 Gene3D - 335 438 IPR036388 -
Viun2g02614 513 Gene3D - 6 66 - -
Viun2g02614 513 MobiDBLite consensus disorder prediction 446 462 - -
Viun2g02614 513 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun2g02614 513 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun2g02614 513 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Viun2g02614 513 FunFam 40S ribosomal protein S10 335 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02614 Viun-Chr2 31951118 31956841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02614 1 307 MYB Transcription Factor Family AT1G63910 50.416 2.29e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun2g02614 S10_plectin 7.1e-42 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02614 K09422 K02947 gmx:100803556 793.497