Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02606 ATGGCTCGACAACTGTGTGAAGACAAATCATCATCTGAATTCTGCTACTCTGATGTGTCATCGGGAAATCCAACGATGCTAGTGAACCAGATCCAAGGCTTTGTGTCAGACCCGGAGATGTACAACCTCAGCACGGGCATGGAAATGATAGGGTTTCCAAAGAGTGACACCAACGCTGTCATGTGGAGAAGTTTCATCCCCAAACCGGGTCCTTCCTCTTCCAAAACCATGAACGAACCTTCCACCCCTTTCTACCACCGTGACTACTGCAACAACAAGCCTTCAGATTTCACACCGGGGAATATTTCTGAAACAAGTGCCGAGAATCTAATCGTGGGAGCCCACGATTCAGCCCCGTGGCAAGACGACAACAACCACAACAGGTTTGATGATTCTTCTTTACGGTGCGTGTTCCCTTGCGAAGCCAACGAAAGGCCCAGTCAAGGTCTTTCACTCTCTCTCAGTTCAACCAACCCTTCCACCATCGGGTTGCAGTCTTTTGAGCTACGACAAACAAGCCATCATCCTGATTTTGTTCCCTCGAGTTCCAGAGAAGGGTTCTTTGGAAAACCAGTGAGTGTTCAGCAGCAACAGATGTTACAAGATGGGTATGTGAGTTCTAATTCCAAAGCTGCAATTGTTTACCAGCAAGGACATTTCCTGGTGAAGAACTCCAGGTATTTGCTGCCTGCACAGGACCTTCTCAACGAGTTTTGTAGCCTAGACGCAAAGATAAGTGAGGCGGGAAAGCCTAAATCGTTGAAGAAGCAGTGGGAAGAGGATAACATATGTAGTGGTTCCTCGAAGAGGCCTTCTCTGACCTCTCTCGAGTTCGTGGAATTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTCGACAGAAGGTACAAGCACTACCGCAATCAGATGAAGAGCGTGGTGTCGTCGTTCGAAGCGGTGGCGGGTAATGGTGCAGCCACGGTGTACTCGGCGTTGGCGCTGAAAGCCATGTCGAGACATTTCAAGTGTTTGAAGGACGGTATTTTGGGTCAGATTCAAGTAACAAGAAAAGCCATGGGAGAGAAAGACCCGATTGCACCGGGCACAACAAGGGGTGAAACGCCGAGGCTCAAAGTCATTGACCAAGCACTGAGACAGCAAAGAGCGTTTCAGCAAATGAGCATGATGGAAACCCACCCTTGGAGACCGCAACGTGGCCTTCCCGAGCGTGCTGTTTCGGTTCTTCGGGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCAAGCGATGTCGATAAGCATATTTTAGCACGCCAAACCGGTCTCTCGAGAGGCCAGGTTTCGAATTGGTTTATTAATGCAAGGGTGAGACTGTGGAAGCCAATGGTGGAGGAAATGTACCTGGAGGAAGTGAAGGATCATGAAAACAACATGGCTTCCTCGGAGGGTGCTACTGATCCAGACAATGATATAAACTCAAATGTTCAGAACCCTCCACCTCATTCATCACGATCAGAGGATCAGAAGCCATCACTGCTTCGAATAGACTCGGAGTGTGCGTCGTCCATCATCAACAACCACACCATAGACAACAAAAACGACCCAAAGAGCCAAGAACAGTGCTTTGGGTCGGTGGAGCTTGATTTTTCATCATACACACACCAGTCTTTCGGAAGCAATGATCAAAACGGGAACGGCCAGAGTGGGGTGTCTCTGACGCTAGGGTTACAGCAGCATGGAGTGAGCCTAGCGTTCCCGCCACCAACACAGAGTTCACTGTACTACGCAAACCCAAGGGACCAAATTGAAGATTGCCAACCAGTTCAGTACTCTCTTTTGGATGGTGAAGGACAAAACCTGCCTTACAGAAATTTGATGGGAGCACAGCTTCTCCATGATTTGGCAGGATAG 1899 0.4887 MARQLCEDKSSSEFCYSDVSSGNPTMLVNQIQGFVSDPEMYNLSTGMEMIGFPKSDTNAVMWRSFIPKPGPSSSKTMNEPSTPFYHRDYCNNKPSDFTPGNISETSAENLIVGAHDSAPWQDDNNHNRFDDSSLRCVFPCEANERPSQGLSLSLSSTNPSTIGLQSFELRQTSHHPDFVPSSSREGFFGKPVSVQQQQMLQDGYVSSNSKAAIVYQQGHFLVKNSRYLLPAQDLLNEFCSLDAKISEAGKPKSLKKQWEEDNICSGSSKRPSLTSLEFVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFKCLKDGILGQIQVTRKAMGEKDPIAPGTTRGETPRLKVIDQALRQQRAFQQMSMMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKDHENNMASSEGATDPDNDINSNVQNPPPHSSRSEDQKPSLLRIDSECASSIINNHTIDNKNDPKSQEQCFGSVELDFSSYTHQSFGSNDQNGNGQSGVSLTLGLQQHGVSLAFPPPTQSSLYYANPRDQIEDCQPVQYSLLDGEGQNLPYRNLMGAQLLHDLAG 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02606 632 SMART prehox3 216 346 IPR006563 -
Viun2g02606 632 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 155 482 - -
Viun2g02606 632 SMART HOX_1 397 461 IPR001356 GO:0003677
Viun2g02606 632 SUPERFAMILY Homeodomain-like 398 464 IPR009057 -
Viun2g02606 632 CDD homeodomain 397 458 IPR001356 GO:0003677
Viun2g02606 632 MobiDBLite consensus disorder prediction 471 506 - -
Viun2g02606 632 Pfam Homeobox KN domain 414 453 IPR008422 GO:0003677|GO:0006355
Viun2g02606 632 Pfam Associated with HOX 222 344 IPR006563 -
Viun2g02606 632 Gene3D - 400 462 - -
Viun2g02606 632 MobiDBLite consensus disorder prediction 476 502 - -
Viun2g02606 632 ProSiteProfiles 'Homeobox' domain profile. 394 457 IPR001356 GO:0003677
Viun2g02606 632 FunFam BEL1-like homeodomain protein 4 400 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02606 Viun-Chr2 31912464 31917094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02606 138 631 Homeobox Transcription Factor Family AT5G41410 48.148 4.77e-136 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun2g02606 POX 2.5e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02606 - - gmx:100803088 1092.8