Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02603 ATGGGATTTCCAGTGGGGTACACAGAGTTGCTGCTACCCAAACTGCTTCTGCACCTCCTATCCCTATTGGGCCTCATCAGAAAACTCCTCACCATCCTCCTCTGCTACATGGGCTTCCACGATTTCTTCGAACCCGACATTGCGTGGCCGGACACCCTCCCGGAATTGCAGTCCGTGTCGGCGGTGCTCATCCGGGAAATCCTGCCCGTCGTCAAGTTCTCGGAGATGGCGGGGGCGGAGGTGGAGGCGGCGGAGAGTTGCGCGGTGTGTCTGTACGAGTTCCAGGGAGAGGACGAGATCAGACGGCTGACAAACTGCCGCCACATATTCCACAGAGGTTGTCTGGACCGTTGGATGGGCTACGATCAGAGAACGTGCCCCCTCTGTCGGACGCCCTTCATACCCCACCATATGCAAGCCGCTTTCAATGATAGACTCTGGGCTGCTTCAGGAATCCCTCAATTCTATTACAACGATGAATGA 483 0.5631 MGFPVGYTELLLPKLLLHLLSLLGLIRKLLTILLCYMGFHDFFEPDIAWPDTLPELQSVSAVLIREILPVVKFSEMAGAEVEAAESCAVCLYEFQGEDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFNDRLWAASGIPQFYYNDE 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02603 160 SUPERFAMILY RING/U-box 86 136 - -
Viun2g02603 160 FunFam RING-H2 finger protein ATL73 64 137 - -
Viun2g02603 160 Pfam Ring finger domain 86 130 IPR001841 -
Viun2g02603 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 21 150 - -
Viun2g02603 160 SMART ring_2 87 129 IPR001841 -
Viun2g02603 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
Viun2g02603 160 ProSiteProfiles Zinc finger RING-type profile. 87 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02603 Viun-Chr2 31890287 31891433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02603 1 151 C3H Transcription Factor Family AT1G63840 59.873 1.91e-63 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02603 K16281 - gmx:102665617 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02603 2 31890287 31891433 Viun2g02603 2 31890287 31891433 ECH
Viun2g02603 2 31890287 31891433 Viun3g00546 3 3347942 3348769 PCT