Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02600 ATGTCTTCCGATCTCTATACTTTTGACATTCCTTTCCCCAGACATTCAGACACAGACAACATGGTCTCCTACGATGCAGATGGAAATCTTATGTTTTTCTCTGACAACCCTTATTCCTTCCCTTTCCTCACTGCCTCTCCAGTTCATGATGTGGCTCAGGGGAATTTCACCAACTCTCTTCACCCTTCTTTCTTCTCTTTTTCTCCTCAGCAAAACCAGAGCCTCTCTCATGCTAACCCGGCGCACCCTCTGTCAAATGGCTCATATATAAAGTCTGAGTTTAGAAATTTCTCTGCTTTGCATGGCTCCGAAGTGACAAGCGAGGAGTGCCAAATGGGTGTGGATTACTCCAGCAATCACCACTTTCTTTCTCAAACTTTTCACGCTTCTGACACTGCATCAAAGGTTATACAAAGGAGCTTCAGCTGTAACTCTTTCGGTGGAAAGCCAGGTTTCCCCTTTGAACCTCACCCTGACACTCTCATGGACTCCCCAAATTTTCATTTGCATCCTCTGATTTCCCCCGAAAACAGTTTCTTCACTGGACAAATGAGGAGGGTGTGCAGTACTGGAGATTTACAGAACACGAAAGCAACAGATATGTCTTCTCAAGTGGAGAGTCCCTTGTTGGAGGAAGCGTACTTCAAAGTGGGGCGTTACAGTGCCGAAGAAAGAAAAGAAAAAATCTCTAGATATAGAGCGAAGAGAAGCCGGAGGAAGTTCAACAAGATTATCAAGTATGCATGCCGAAAGACGCTAGCCGACAATCGAACCCGCATACGTGGCAGATTCGCTCGCAACGACGAGATCAGCGAGATTCCGAAAGCACTTTCTTCAACTTCAACAACAGAAGAATATGAAGACGAATTCTGGGTTGAGTTCATTGAAGGATTAAACGAGGAGGTGATGGGTTAG 915 0.4525 MSSDLYTFDIPFPRHSDTDNMVSYDADGNLMFFSDNPYSFPFLTASPVHDVAQGNFTNSLHPSFFSFSPQQNQSLSHANPAHPLSNGSYIKSEFRNFSALHGSEVTSEECQMGVDYSSNHHFLSQTFHASDTASKVIQRSFSCNSFGGKPGFPFEPHPDTLMDSPNFHLHPLISPENSFFTGQMRRVCSTGDLQNTKATDMSSQVESPLLEEAYFKVGRYSAEERKEKISRYRAKRSRRKFNKIIKYACRKTLADNRTRIRGRFARNDEISEIPKALSSTSTTEEYEDEFWVEFIEGLNEEVMG 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02600 304 Pfam CCT motif 225 267 IPR010402 GO:0005515
Viun2g02600 304 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 79 276 IPR045281 GO:0009909
Viun2g02600 304 ProSiteProfiles CCT domain profile. 225 267 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02600 Viun-Chr2 31882823 31884754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02600 221 272 C2C2-CO-like Transcription Factor Family AT5G24930 48.077 1.40e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun2g02600 CCT 8e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02600 - - pvu:PHAVU_002G158500g 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02600 2 31882823 31884754 Viun2g02600 2 31882823 31884754 ECH
Viun2g02600 2 31882823 31884754 Viun3g00548 3 3371684 3373801 PCT