Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02580 ATGGGGAAGGGAAAACCTAGAGCCGTTGAGAAAGGTGTGGTAGGACCTAGTTTGAGTGTAGCATCCTCAAGTATACCTGCAGGGCCTGTGTATTACCCTACTGAGGATGAATTTAAGGATCCTTTGGAGTATATTTACAAGATTAGACCCGAGGCTGAGCCTTATGGAATTTGTAAGATTGTGCCTCCCAAGAGTTGGAAACCCCGTTTTGCTTTGGATCTAGACGCTTTCACTTTCCCTACCAAGACTCAGGCCATTCACAAGCTCCAGGCACGCCCTGCTTCCTGTGACTCCAAGACCTTTGACTTGGAGTATTCTAGGTTTTTGAAGGATCACTGTAGTAAGAAGTCCAGGAAAAGGGTTGTGTTCGAAGGGGCGGAGCTGGACTTGTGTAAGCTGTTCAATGCCGTGAAGCGGTATGGTGGTTATGATAAGGTTGTTGATGGGAAGAAATGGGGGGATGTTGCTCGGTTTGTCAGGTCCACTGGGAAGATTTCGGATTGTGCTAAGCATGTCTTGTGTCAGTTGTACCGGGAACATTTGTATGATTACGAGAATTTTTATAACCAGATGAATCAAGGGACAGACCAGAGTTGTAAGAAAACCTTGTATGAGGAGCACAAGAGTGATTGTGGGGTGAAACCTTTGGTGTCGAAGAGGATTCACAAGAGTGTTGATTGTTTGAAACCGAAGGATAGTAAAGGGCAAGGAGAAGAGCATGATCAGATTTGTGAACAGTGTAAAAGTGGTCTGCATGGGGAACTCATGCTTTTGTGTGACAGATGTGATAAGGGATGGCATACATATTGTCTTTCCCCGCCATTGAAGCAAATTCCAAAGGGTAATTGGTATTGTTTCAACTGCTTGAATTCTGATCGGGACAGCTTTGGTTTTGTGCCTGGGAAGCACTATTCATTGGAAGCTTTTAGACGTAAGGCGGATCTGTCAAGGAGGAGATGGTTTGGATCGGGGCCTGTTTCAAGAGTGCAAATAGAGAAAAAATTTTGGGATATTGTGGAGGGTTTGGTTGGTGAGGTTGAGGTTATGTATGGAAATGACTTGGATACATCTGTTTATGGGAGTGGTTTTCCACGTGTAGCTGATAAAAAACCAGAATGGATTGATGACAAATTATGGGAAGAATACTCAACTAACCCGTGGAATCTTAATAACCTGCCTAAGTTGAAAGGTTCAATGCTCCGAGCTGTTCATCACAATATCACCGGCGTCATGGTACCCTGGCTATATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCAATGAATTATCTACACTGGGGAGAGGCAAAGTGCTGGTACAGTGTGCCTGGTAGTCAATCCAGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACTATGCTGAATCCATCTGTATTGCAAGAAAATGGAGTTCCTGTCTACAGTATACTTCAGGAGCCTGGGAATTTTGTTATTACCTTCCCCAGGTCTTACCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCTGCTGACTGGCTACCGCATGGTGCTTTTGGAGCTGATCTCTATCAGCGGTATCACAAAACTGCTGTCTTATCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGAAGTAGACAGCAGGGTCTCTTCTTATTTGAGGAACGAATTGCTGAGAATATCAGTTAAAGAAAAATCTCGAAGAGAGAAACTTTGGAAAAATGGTATTATTAAGTCTTCTCGCATGGCTCCTCGAAAATGTCCCCAATTTGTGGGAACCGAAGAAGATCCAGCATGCGTCATATGCCAGCAATATCTCTATCTCTCTGCTGTTGTATGTGGTTGCAGGCCATCAGCTTTTGTCTGTCTGGAGTGTTCTCTCTTGCAGCACTGGGAACACCTTTGTGAGTGCAAAACTGTTAAATTGCGTCTTCTCTATCGTCATTCACTTGCAGAATTGTATGACTTGGCCCATTCTATGGACAAATATACTTCCGAGGACAAAGCTGAGTGTAGAAGTGTGAAAAGGCAGCCTTCATGTCTCAGTGCTTTGACCAAAAAGGTAAAAGGTGGCTCCATCACTTTTGCTCAACTTGCTACAGAGTGGCTTCTGCAATCTAGTTCTATTCTTCAAAATGTCTTTTTGAAAGATGCATTTGTTACTGCACTGAGGAAAGCTGAACAATTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTCGAGACATGGTAAGGAATTTGCTTCAAGCTCAGGAATGGGCAGAAGGGATAAGAGACTGTGTAACTAAAATTGAGATATGGTTGTGTCATCGAGACTCTAGTGTAAAGAAAGTTCATTTAGAATCCGTTGATGAGTTGCTGAAATTTAGTCCTGCACCTTGCAATGAGCCTTGTTATCATAAACTGAAGGAGTATGCAGAGGAAGCAAGGTTGTTTGTTCAGGAGATTGATACTGCTTTGTCAATGTCTTTAAATATGTCTGAGTTGGAACTTTTATACTCCAAAGCTTGTGGCTTACCCATCTACGTGAAAGAAAATAAGAAATTGGAAGGAAAAATTTCTTCAACCAAGGCATGGCTGGATAGTGTCAGAAACTGCATCTCAGCTAGACAGCCTGCTGCACTACATGTTGATGTTCTTTATAAACTAAAAGCAGAGTTTTGGGATCTTCAAGTTCAACTCCCGGAGATAGATGTGCTTCAGAATCTACTAAATGAGGCTGAATCTTGTAGTGCTCAATGTCATGATATGTTAGAAGGACCTATGAATCTCAAGAATGTTAGTTTGCTGCTTAAGGAATGGGAAAATTTTGCAGTTGATGTACCAGAACTCAAGCTTCTAAGGCAATACCATTCGGATACTGTTTCATGGGTTTCCCACTGTAATGATGTTTTAGGGAGAGTTCACATGCAGGAAGATCAGCACAATGTCGTTGATAAATTGAATAGTATTTTTGAAGCAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCATTGGTTGAGGTTGAGCTGAAGAAGGCTCACTGTCGGGAAAAGGCTGTGAAGGCACATGATTTTAAGATGCCTTTGGAATTCATCCAGCAACTCTTGAAGGAGGCCACCATGCTTCAAATTGAGGGAGAGAAACAATTTGTCAATCTGTCTTGCATGCTTACTGCTGCCATTCCTTGGGAGGAAAGGGCTAGAGGGATGCTTTCACATGAGGCTCCTATTTTGGACTTTGAGGACATGATCAGAGCTTCAGAGAACATATTTGTTATTCTTCCTTCACTTAATGATGTCAAGGACGCTTTATCAGAAGCTAATTCCTGGTTAAAGAATTCAAAACCATATTTCGTCTCTTCTATGCAAACTTCTGATTCTATGCAGAAAGTTGAGGACTTACAGATGTTGGTTTCTCAATCGAAGCATCTTAAAGTATCATTTGAAGAAAGAGGAATGCTTGAATTGGTTTTGAAAAACTGCAGAACGTGGGAGTATGAAGCATTTTCTGTACTAGATGATGCCCGGTGCTTATTTGAACTGGATAGCTCTCTGCATCAAATAGACAGTGGTTTAATGTGTAACATGGAAGATTTGATTGTAAGAATCCAATCCACCATAGCATCCGGTACATCGCTGGGTTTTGACTTTGGTGAGATTTCAAAACTTCAAGCATCTTGTTCTACGCTGCAGTGGTGCAAAAGGGCCTTGTCTTTCTCCAATTGCTCTCCTTCTTTAGAGGACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCCTCTATTTCTGGGGCTCTGTTGAAACTATTGATAGGTGGGCTTGAATGGCTTAAGAAGGCATTAGAGGCGATTTCTGGTCCTTACAATTCTAGAAGATGCAAGTTGACTGACATACAAGCTATTCTTACTGATTATGAGACTATTAATATGACCTTTACAGCAGTAAATATTCAACTTGAAGATGCCATTGGAAAACATAAGTTGTGGCAAGAGCAAGTGTGCCAATTTTTTGGTCTAAGTTTTAGAGAGCGGTCCTGGTCTTCAATATTGCAGCTCAAGGAGTATGGAGATACCATTGCCTTTGGTTGCTGTGAACTGGATTTGGTTTTATCTGAAGTTAAGAAGGTGGAAAATTGGAAGAAAACGTGCATGGATAAATTAGGAGCCTCAGTGAAAAATGAAAATTCGCTACTTCATGCATTGGAGAAGATGGGACAGACTCTAGATAGATCATTGCTAATGTATGACAATTTGCAAGATCTGAAGGAACCAAACCAATGTATCTGCTGCTTTGATGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGCTATCATGCACAATGTGTTGGACTAACAGAAGAAGACTTAGCCATTGAAAACTACCAGTGCCCATATTGTGAAATTCTAAGGGGTGAATTCCGTTATCAGAATGGAGGTGCTCTACTGAGGTTTGAGAAGAAACGTGTTGAATTGAAAGTTCTTACTGAACTCATGTCTGAGGCCGAAAATTTATGTTTATGGATTGATGAAAGAGATGTTTTGAGTCAACTTGTTGAGAAAGCCCTTTCATGCAAATCTTTCTTGAAAGAAATTGTAATCCTTGCATCAGCTAATGTTGATCAAGATACCAGTGTCATCTCTGAAAAATTAGCCACTGCTGTAAAGGCTAGCAATGTGGCCGTTGTCTATGATCAGCACGATACTTGTGACCTTGAGCTGACTTTAGCAAAAACCTTGTGGAAAGTTCAAGTTAATAGAATATTAAATGGTATACCAAAGCCCACTGTCCAGCGTATTCAGAAGCATCTGAAGGAGGTGGCATCGGATTTTGGGGCACTCGGCCTTGATAAAGTTCTTGAACTTATAGTGGAAGGTGAAAAGTTGCCTGTTGATGCGAATGAGGAACTAAGCTTGTTAAGGGCACGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCAGAAAGGATGATTGCATGTTGTCGTTGTAATGAGTGGTATCACTTTGATTGCATGAAATTGCCATGCACAAGAGAAGTCTACATTTGTCCCGCGTGTGCTCCATGTACGGAAGGATTACCTCCAAACCATGACAGATTAACTAGTGGTAAATTTGAGGAGCCTAAAACCCCGTCTCCCAGGCATTCAAACCCTAGAAAGAAACAGAAGAGAGACGTGCACAGTCTCACTTGCAATACGTTCGCTACCAGGGATGAAGATAGTGAGTGTAGGTATCCGAGTGGGATAGAATGTCTAAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCAGCCAAGAAACGTGTTGAACTTCGAAGTCTTTCTCCATTTCTTTGCATACAAAGATAG 5418 0.4166 MGKGKPRAVEKGVVGPSLSVASSSIPAGPVYYPTEDEFKDPLEYIYKIRPEAEPYGICKIVPPKSWKPRFALDLDAFTFPTKTQAIHKLQARPASCDSKTFDLEYSRFLKDHCSKKSRKRVVFEGAELDLCKLFNAVKRYGGYDKVVDGKKWGDVARFVRSTGKISDCAKHVLCQLYREHLYDYENFYNQMNQGTDQSCKKTLYEEHKSDCGVKPLVSKRIHKSVDCLKPKDSKGQGEEHDQICEQCKSGLHGELMLLCDRCDKGWHTYCLSPPLKQIPKGNWYCFNCLNSDRDSFGFVPGKHYSLEAFRRKADLSRRRWFGSGPVSRVQIEKKFWDIVEGLVGEVEVMYGNDLDTSVYGSGFPRVADKKPEWIDDKLWEEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEAKCWYSVPGSQSSAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGAFGADLYQRYHKTAVLSHEELLCVVAQYGEVDSRVSSYLRNELLRISVKEKSRREKLWKNGIIKSSRMAPRKCPQFVGTEEDPACVICQQYLYLSAVVCGCRPSAFVCLECSLLQHWEHLCECKTVKLRLLYRHSLAELYDLAHSMDKYTSEDKAECRSVKRQPSCLSALTKKVKGGSITFAQLATEWLLQSSSILQNVFLKDAFVTALRKAEQFLWAGSEMDSVRDMVRNLLQAQEWAEGIRDCVTKIEIWLCHRDSSVKKVHLESVDELLKFSPAPCNEPCYHKLKEYAEEARLFVQEIDTALSMSLNMSELELLYSKACGLPIYVKENKKLEGKISSTKAWLDSVRNCISARQPAALHVDVLYKLKAEFWDLQVQLPEIDVLQNLLNEAESCSAQCHDMLEGPMNLKNVSLLLKEWENFAVDVPELKLLRQYHSDTVSWVSHCNDVLGRVHMQEDQHNVVDKLNSIFEAGLSLKIQVDELPLVEVELKKAHCREKAVKAHDFKMPLEFIQQLLKEATMLQIEGEKQFVNLSCMLTAAIPWEERARGMLSHEAPILDFEDMIRASENIFVILPSLNDVKDALSEANSWLKNSKPYFVSSMQTSDSMQKVEDLQMLVSQSKHLKVSFEERGMLELVLKNCRTWEYEAFSVLDDARCLFELDSSLHQIDSGLMCNMEDLIVRIQSTIASGTSLGFDFGEISKLQASCSTLQWCKRALSFSNCSPSLEDVLEVAEGLSHSSISGALLKLLIGGLEWLKKALEAISGPYNSRRCKLTDIQAILTDYETINMTFTAVNIQLEDAIGKHKLWQEQVCQFFGLSFRERSWSSILQLKEYGDTIAFGCCELDLVLSEVKKVENWKKTCMDKLGASVKNENSLLHALEKMGQTLDRSLLMYDNLQDLKEPNQCICCFDDSEDQEFLTCSTCMDCYHAQCVGLTEEDLAIENYQCPYCEILRGEFRYQNGGALLRFEKKRVELKVLTELMSEAENLCLWIDERDVLSQLVEKALSCKSFLKEIVILASANVDQDTSVISEKLATAVKASNVAVVYDQHDTCDLELTLAKTLWKVQVNRILNGIPKPTVQRIQKHLKEVASDFGALGLDKVLELIVEGEKLPVDANEELSLLRARCMLYCICRKPFDPERMIACCRCNEWYHFDCMKLPCTREVYICPACAPCTEGLPPNHDRLTSGKFEEPKTPSPRHSNPRKKQKRDVHSLTCNTFATRDEDSECRYPSGIECLRWQNRKPFRRAAKKRVELRSLSPFLCIQR 1805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02580 1805 Pfam jmjN domain 29 62 IPR003349 -
Viun2g02580 1805 SUPERFAMILY FYVE/PHD zinc finger 231 291 IPR011011 -
Viun2g02580 1805 Gene3D Cupin 261 553 - -
Viun2g02580 1805 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Viun2g02580 1805 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Viun2g02580 1805 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Viun2g02580 1805 SMART PHD_3 1444 1490 IPR001965 -
Viun2g02580 1805 SMART PHD_3 243 289 IPR001965 -
Viun2g02580 1805 SMART PHD_3 1669 1711 IPR001965 -
Viun2g02580 1805 ProSitePatterns Zinc finger PHD-type signature. 1670 1710 IPR019786 -
Viun2g02580 1805 SMART ARID_2 92 185 - -
Viun2g02580 1805 CDD ARID 97 185 - -
Viun2g02580 1805 SMART JmjN_1 27 68 IPR003349 -
Viun2g02580 1805 MobiDBLite consensus disorder prediction 1724 1751 - -
Viun2g02580 1805 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Viun2g02580 1805 SMART bright_3 96 190 IPR001606 GO:0003677
Viun2g02580 1805 SMART cupin_9 381 547 IPR003347 -
Viun2g02580 1805 ProSitePatterns Zinc finger PHD-type signature. 1445 1489 IPR019786 -
Viun2g02580 1805 Pfam ARID/BRIGHT DNA binding domain 107 185 IPR001606 GO:0003677
Viun2g02580 1805 Gene3D Cupin 14 124 - -
Viun2g02580 1805 SUPERFAMILY ARID-like 78 199 IPR036431 GO:0003677
Viun2g02580 1805 SUPERFAMILY FYVE/PHD zinc finger 1663 1716 IPR011011 -
Viun2g02580 1805 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1144 - -
Viun2g02580 1805 Pfam PLU-1-like protein 947 1184 IPR013637 -
Viun2g02580 1805 Pfam PLU-1-like protein 1143 1399 IPR013637 -
Viun2g02580 1805 Pfam C5HC2 zinc finger 624 680 IPR004198 -
Viun2g02580 1805 SUPERFAMILY Clavaminate synthase-like 367 562 - -
Viun2g02580 1805 FunFam Predicted protein 349 552 - -
Viun2g02580 1805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1434 1502 IPR013083 -
Viun2g02580 1805 Pfam PHD-finger 243 290 IPR019787 -
Viun2g02580 1805 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Viun2g02580 1805 CDD PHD_RSF1 244 288 - -
Viun2g02580 1805 Coils Coil 1507 1527 - -
Viun2g02580 1805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1654 1712 IPR013083 -
Viun2g02580 1805 MobiDBLite consensus disorder prediction 1724 1738 - -
Viun2g02580 1805 SUPERFAMILY FYVE/PHD zinc finger 1441 1490 IPR011011 -
Viun2g02580 1805 FunFam Transcription factor jumonji (JmjC) domain-containing protein 15 118 - -
Viun2g02580 1805 ProSiteProfiles JmjC domain profile. 381 547 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02580 Viun-Chr2 31803092 31823536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02580 37 92 JUMONJI Transcription Factor Family AT4G20400 48.333 1.89e-08 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun2g02580 PLU-1 3.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02580 K11446 - gmx:100789512 3195.6