Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02577 ATGGATGGAAGAGAAGGTATGGGTTTTCCTGGCGGCTCTGCTCCATATTACATGCAGCATAGAGGAGGGGTTAGTGGGTCTGGTCCTGGAACCGGAACACCCTCTGGGTTCCAACCACCTTCTGGGTTCAGGGCTTTGTCAAATGTCTCATCAGGTTCTACATTCTCATTAGAAGCTAAGCCTCAGCCTCAGTCTCAACCCCAGCCTCAACCTCAGCTTGGTGGTTTCGGTCATGGCATTAATTTAGGTTCCTCACCTGGCATCAACTTGGGTTCCTCACCTAACGGTGGAGGTGGAAGTGCAATGTCTTCTTCCGGTGAGGCTGTGAAAAAGAAAAGAGGGAGGCCAAGAAAGTATGGTCCTGATAGTGGGACTGTTTCCCTGAGACTCTCTCCCTTGTCTGCCACTGCTAATTCCACCCCAGGATCAGGCAATCCCTCAGAGAAACGACCCAGAGGGCGCCCACCTGGAAGTGGAAGGAAACAACAACTTGCTAATTTAGGTGAATGGATGAACAGTTCTGCAGGACTTGCCTTTTCACCTCATGTTATCACTGTTGCAGTTGGGGAGGACATTGTAGCAAAGTTATTCGCATTTTCACAGCAGAGGCCAAGGGCTTTGTGCATCTTAAGTGGAACTGGAACTGTTTCTTCTGTCACTCTGCGCCAGCCAGCTTCTACTAGCATCAGTGTTTCTTATGAGGGCCGATTTCAAATATTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGAAGGTGGACCACGCAGTAGAACAGGTGGCATGAGTGTTTCCCTTTCTAGTCCTGATGGCCATATTGTTGGTGGTGGTGTTGCCAGCCTTATAGCTGCAAGCCCAGTCCAGGTGGTAGTGTGCAGTTTTGTATATTCAGGTTCTAAGCCAAAGACTAAACAAGTGACCACTGCTACAAAAGAAAACAGTTCTGAACCTCAGAGTAGTGAGAAGTTAGCTTCTCCAGCCAGTGCTCCTCCTAATCAAAACTACTCTTCTCCTGCCCCAGGCATGTGGCCTGCTCAATCAAGGCCATTAGAGGTGAAAAGTGCACATCCACACACTGGTATTGACTTGACGCGTGGGTGA 1098 0.4891 MDGREGMGFPGGSAPYYMQHRGGVSGSGPGTGTPSGFQPPSGFRALSNVSSGSTFSLEAKPQPQSQPQPQPQLGGFGHGINLGSSPGINLGSSPNGGGGSAMSSSGEAVKKKRGRPRKYGPDSGTVSLRLSPLSATANSTPGSGNPSEKRPRGRPPGSGRKQQLANLGEWMNSSAGLAFSPHVITVAVGEDIVAKLFAFSQQRPRALCILSGTGTVSSVTLRQPASTSISVSYEGRFQILCLSGSYLVAEEGGPRSRTGGMSVSLSSPDGHIVGGGVASLIAASPVQVVVCSFVYSGSKPKTKQVTTATKENSSEPQSSEKLASPASAPPNQNYSSPAPGMWPAQSRPLEVKSAHPHTGIDLTRG 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02577 365 MobiDBLite consensus disorder prediction 302 340 - -
Viun2g02577 365 MobiDBLite consensus disorder prediction 1 162 - -
Viun2g02577 365 PRINTS AT-hook-like domain signature 110 120 IPR017956 GO:0003677
Viun2g02577 365 PRINTS AT-hook-like domain signature 147 158 IPR017956 GO:0003677
Viun2g02577 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 181 294 IPR005175 -
Viun2g02577 365 Gene3D - 181 311 - -
Viun2g02577 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 64 331 IPR039605 GO:0003680
Viun2g02577 365 ProSiteProfiles PPC domain profile profile. 173 315 IPR005175 -
Viun2g02577 365 MobiDBLite consensus disorder prediction 127 146 - -
Viun2g02577 365 MobiDBLite consensus disorder prediction 26 63 - -
Viun2g02577 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 178 295 - -
Viun2g02577 365 CDD DUF296 181 293 IPR005175 -
Viun2g02577 365 MobiDBLite consensus disorder prediction 302 365 - -
Viun2g02577 365 MobiDBLite consensus disorder prediction 85 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02577 Viun-Chr2 31789580 31793769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02577 1 365 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.746 7.15e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02577 - - gmx:100790569 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02577 2 31789580 31793769 Viun3g00589 3 3645530 3649730 PCT